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Record W2079676560 · doi:10.1080/07060660609507299

Polerovirus ORF0 genes induce a host-specific response resembling viral infection

2006· article· en· W2079676560 on OpenAlexaffvenue
Dirk Prüfer, L. M. Kawchuk, W. Rohde

Bibliographic record

VenueCanadian Journal of Plant Pathology · 2006
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Virus Research Studies
Canadian institutionsAgriculture and Agri-Food Canada
Fundersnot available
KeywordsPotato leafroll virusBiologyNicotiana benthamianaVirologyTransgeneGenetically modified cropsVirusLuteovirusHost (biology)GeneSolanumPotato virus YPlant virusBotanyGenetics

Abstract

fetched live from OpenAlex

Constitutive expression of the ORF0 (open reading frame 0) gene product from the Potato leafroll virus (PLRV) in transgenic host potato plants is known to produce viral-disease-like symptoms. To determine whether these symptoms were the result of a host-specific response to transgene expression, PLRV ORF0 and the orthologous-ORF0 genes of the closely related poleroviruses Beet western yellows virus (BWYV) and Cucurbit aphid-borne yellows virus (CABYV) were stably transformed into Solanum tuberosum and Nicotiana benthamiana plants. Only potato plants expressing the PLRV ORF0 displayed symptoms typical of virus infection, indicating a host-specific response of potato to the ORF0 gene product of the naturally infecting virus PLRV. Nicotiana benthamiana plants transgenic for PLRV ORF0 were phenotypically indistinguishable from pBIN19-transgenic and nontransformed plants, and symptom development was not obtained with potato or tobacco plants transgenic for ORF0 from BWYV or CABYV. Symptom development in potato plants transgenic for PLRV ORF0 coincided with an abnormal sugar metabolism resulting in an unusually high accumulation of starch in mesophyll cells. Tissue-specific expression of ORF0 in potato tubers resulted in abnormal tuber formation, reduced dormancy, and increased starch accumulation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.245
Teacher spread0.200 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2006
Admission routes2
Has abstractyes

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Same venueCanadian Journal of Plant PathologySame topicPlant Virus Research StudiesFrench-language works237,207