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Record W2083757764 · doi:10.1074/jbc.m702112200

Retinoic Acid-inducible Gene-I and Interferon-β Promoter Stimulator-1 Augment Proapoptotic Responses Following Mammalian Reovirus Infection via Interferon Regulatory Factor-3

2007· article· en· W2083757764 on OpenAlexafffund
Geoffrey H. Holm, Jennifer Zurney, Vanessa Tumilasci, Simon Léveillé, Pranav Danthi, John Hiscott, Barbara Sherry, Terence S. Dermody

Bibliographic record

VenueJournal of Biological Chemistry · 2007
Typearticle
Languageen
FieldMedicine
TopicViral gastroenteritis research and epidemiology
Canadian institutionsTerry Fox Research InstituteMcGill University
FundersNational Institute of Diabetes and Digestive and Kidney DiseasesNational Institute of Allergy and Infectious DiseasesVanderbilt-Ingram Cancer CenterNational Cancer InstituteVanderbilt UniversityVanderbilt Diabetes Research and Training Center, Vanderbilt University Medical CenterCanadian Institutes of Health Research
KeywordsInterferonInterferon regulatory factorsBiologyIRF1Retinoic acidViral replicationCell biologyApoptosisCytokineTranscription factorVirologyVirusCell cultureImmunologyGeneBiochemistry

Abstract

fetched live from OpenAlex

During viral infection, cells initiate antiviral responses to contain replication and inhibit virus spread. One protective mechanism involves activation of transcription factors interferon regulatory factor-3 (IRF-3) and NF-κB, resulting in secretion of the antiviral cytokine, interferon-β. Another is induction of apoptosis, killing the host cell before virus disseminates. Mammalian reovirus induces both interferon-β and apoptosis, raising the possibility that both pathways are initiated by a common cellular sensor. We show here that reovirus activates IRF-3 with kinetics that parallel the activation of NF-κB, a known mediator of reovirus-induced apoptosis. Activation of IRF-3 requires functional retinoic acid inducible gene-I and interferon-β promoter stimulator-1, but these intracellular sensors are dispensable for activation of NF-κB. Interferon-β promoter stimulator-1 and IRF-3 are required for efficient apoptosis following reovirus infection, suggesting a common mechanism of antiviral cytokine induction and activation of the cell death response. During viral infection, cells initiate antiviral responses to contain replication and inhibit virus spread. One protective mechanism involves activation of transcription factors interferon regulatory factor-3 (IRF-3) and NF-κB, resulting in secretion of the antiviral cytokine, interferon-β. Another is induction of apoptosis, killing the host cell before virus disseminates. Mammalian reovirus induces both interferon-β and apoptosis, raising the possibility that both pathways are initiated by a common cellular sensor. We show here that reovirus activates IRF-3 with kinetics that parallel the activation of NF-κB, a known mediator of reovirus-induced apoptosis. Activation of IRF-3 requires functional retinoic acid inducible gene-I and interferon-β promoter stimulator-1, but these intracellular sensors are dispensable for activation of NF-κB. Interferon-β promoter stimulator-1 and IRF-3 are required for efficient apoptosis following reovirus infection, suggesting a common mechanism of antiviral cytokine induction and activation of the cell death response. A primary function of the innate immune system is to detect nascent viral infections and direct subsequent cellular responses. The innate immune system responds to infection by producing a range of soluble cytokines, such as interferon-β (IFN-β), 5The abbreviations used are: IFN, interferon; TLR, Toll-like receptor; RIG-I, retinoic acid inducible gene-I; Mda-5, melanoma differentiation-associated protein-5; IPS-1, interferon-β promoter stimulator-1; IKK, inhibitor of κB kinase; IRF-3, interferon regulatory factor-3; ISG, interferon-stimulated gene; PKR, protein kinase R; ds, double-stranded; MEF, mouse embryo fibroblast; T3D, type 3 Dearing; ISVP, infectious subvirion particle; STAT, signal transducers and activators of transcription; MOI, muliplicity of infection; PFU, plaque-forming unit(s); PBS, phosphate-buffered saline; RT, reverse transcription; siRNA, small interfering RNA. that create an antiviral state in surrounding tissue. In response to these immune pressures, viruses have evolved multiple strategies for subverting innate immunity, which frequently center on manipulating cell death pathways. The interface between the innate immune response, viral infection, and the cellular apoptotic machinery is therefore a critical nexus of disease pathogenesis. Cells possess a variety of sensors to detect invading pathogens. Toll-like receptors (TLRs) and other pattern recognition receptors, including the nucleotide-binding oligomerization domain proteins and RNA helicases such as retinoic acid-inducible gene-I (RIG-I) and melanoma differentiation-associated protein-5 (Mda-5), recognize viral pathogen-associated molecular patterns (1Mogensen T.H. Paludan S.R. J. Mol. Med. 2005; 83: 180-192Crossref PubMed Scopus (106) Google Scholar). TLRs are expressed on the cell surface and recognize extracellular pathogen-associated molecular patterns, whereas RIG-I and Mda-5 detect intracellular viral RNA products (2Sumpter R.J. Loo Y.M. Foy E. Li K. Yoneyama M. Fujita T. Lemon S.M. Gale M.J. J. Virol. 2005; 79: 2689-2699Crossref PubMed Scopus (734) Google Scholar, 3Yoneyama M. Kikuchi M. Natsukawa T. Shinobu N. Imaizumi T. Miyagishi M. Taira K. Akira S. Fujita T. Nat. Immunol. 2004; 5: 730-737Crossref PubMed Scopus (3136) Google Scholar, 4Kato H. Takeuchi O. Sato S. Yoneyama M. Yamamoto M. Matsui K. Uematsu S. Jung A. Kawai T. Ishii K.J. Yamaguchi O. Otsu K. Tsujimura T. Koh C.S. Reis e Sousa C. Matsuura Y. Fujita T. Akira S. Nature. 2006; 441: 101-105Crossref PubMed Scopus (2933) Google Scholar). RIG-I recognizes viral RNAs from the Flaviviridae, Orthomyxoviridae, Paramyxoviridae, and Rhabdoviridae families, whereas Mda-5 is involved in the response to Picornaviridae (4Kato H. Takeuchi O. Sato S. Yoneyama M. Yamamoto M. Matsui K. Uematsu S. Jung A. Kawai T. Ishii K.J. Yamaguchi O. Otsu K. Tsujimura T. Koh C.S. Reis e Sousa C. Matsuura Y. Fujita T. Akira S. Nature. 2006; 441: 101-105Crossref PubMed Scopus (2933) Google Scholar). The ligand for RIG-I has been identified asa5′ triphosphate moiety on single- or double-stranded RNA (5Hornung V. Ellegast J. Kim S. Brzozka K. Jung A. Kato H. Poeck H. Akira S. Conzelmann K.K. Schlee M. Endres S. Hartmann G. Science. 2006; 314: 994-997Crossref PubMed Scopus (1909) Google Scholar, 6Pichlmair A. Schulz O. Tan C.P. Naslund T.I. Liljestrom P. Weber F. Reis e Sousa C. Science. 2006; 314: 997-1001Crossref PubMed Scopus (1779) Google Scholar); the molecular ligand for Mda-5 is unknown. Following ligand engagement, these intracellular sensors signal through caspase activation and recruitment domains to activate the adaptor, interferon-β promoter stimulator-1 (IPS-1/MAVS/VISA/Cardif) (7Kawai T. Takahashi K. Sato S. Coban C. Kumar H. Kato H. Ishii K.J. Takeuchi O. Akira S. Nat. Immunol. 2005; 6: 981-988Crossref PubMed Scopus (2032) Google Scholar, 8Seth R.B. Sun L. Ea C.K. Chen Z.J. Cell. 2005; 122: 669-682Abstract Full Text Full Text PDF PubMed Scopus (2518) Google Scholar, 9Xu L.G. Wang Y.Y. Han K.J. Li L.Y. Zhai Z. Shu H.B. Mol. Cell. 2005; 19: 727-740Abstract Full Text Full Text PDF PubMed Scopus (1518) Google Scholar, 10Meylan E. Curran J. Hofmann K. Moradpour D. Binder M. Bartenschlager R. Tschopp J. Nature. 2005; 437: 1167-1172Crossref PubMed Scopus (1973) Google Scholar). IPS-1 activates inhibitor of κB kinase (IKK)-α, IKK-β, IKK-ϵ, and Tank-binding kinase 1 to phosphorylate transcription factors, including activating transcription factor-2/c-Jun, NF-κB, and interferon regulatory factor-3 (IRF-3), which direct transcription of antiviral genes. The main cytokine effectors of the innate antiviral response are type I interferons IFN-α and IFN-β, which are secreted from cells and act in an autocrine or paracrine manner via binding to a common IFN-α/β receptor (11Chawla-Sarkar M. Lindner D.J. Liu Y.F. Williams B.R. Sen G.C. Silverman R.H. Borden E.C. Apoptosis. 2003; 8: 237-249Crossref PubMed Scopus (677) Google Scholar). Receptor engagement activates the JAK/STAT signaling pathway, which initiates a second transcriptional response to induce IFN-stimulated genes (ISGs), which directly mediate antiviral effects. One such ISG is IRF-7, which enhances IFN production (12Lu R. Au W.C. Yeow W.S. Hageman N. Pitha P.M. J. Biol. Chem. 2000; 275: 31805-31812Abstract Full Text Full Text PDF PubMed Scopus (140) Google Scholar). Other ISGs, such as 2′,5′-oligoadenylate synthase, RNase L, and protein kinase R (PKR), inhibit cellular protein synthesis to prevent viral replication (11Chawla-Sarkar M. Lindner D.J. Liu Y.F. Williams B.R. Sen G.C. Silverman R.H. Borden E.C. Apoptosis. 2003; 8: 237-249Crossref PubMed Scopus (677) Google Scholar). Innate antiviral responses interface both directly and indirectly with the cellular apoptosis machinery. Type I IFNs mediate proapoptotic responses, as several ISGs have ascribed functions in both extrinsic and intrinsic pathways of apoptosis (11Chawla-Sarkar M. Lindner D.J. Liu Y.F. Williams B.R. Sen G.C. Silverman R.H. Borden E.C. Apoptosis. 2003; 8: 237-249Crossref PubMed Scopus (677) Google Scholar). Proapoptotic ISGs include tumor necrosis factor-related apoptosis-inducing ligand (13Kayagaki N. Yamaguchi N. Nakayama M. Eto H. Okumura K. Yagita H. J. of Exp. Med. 1999; 189: 1451-1460Crossref PubMed Scopus (435) Google Scholar) and Fas (14Selleri C. Sato T. Del Vecchio L. Luciano L. Barrett A.J. Rotoli B. Young N.S. Maciejewski J.P. Blood. 1997; PubMed Google Scholar). these cell or (11Chawla-Sarkar M. Lindner D.J. Liu Y.F. Williams B.R. Sen G.C. Silverman R.H. Borden E.C. Apoptosis. 2003; 8: 237-249Crossref PubMed Scopus (677) Google Scholar). Innate immune signaling induce apoptotic cell death in an IPS-1 to the of suggesting that the antiviral response with or R.B. Sun L. Ea C.K. Chen Z.J. Cell. 2005; 122: 669-682Abstract Full Text Full Text PDF PubMed Scopus (2518) Google Scholar). IPS-1 with via death domain to mediate activation (7Kawai T. Takahashi K. Sato S. Coban C. Kumar H. Kato H. Ishii K.J. Takeuchi O. Akira S. Nat. Immunol. 2005; 6: 981-988Crossref PubMed Scopus (2032) Google suggesting that via death domain activation of RIG-I and Mda-5 to extrinsic apoptotic pathways. activation of IRF-3 directly induce apoptosis via a mechanism of induction of IFN C. S. M.J. C. R. J. J. Virol. 2000; PubMed Scopus Google Scholar). are the cellular apoptotic response. Mammalian are viruses with a of of double-stranded RNA P.M. Williams Scholar). Following infection of reovirus to the and P.M. Williams Scholar). by reovirus is the primary mechanism for S.M. J. Virol. 1997; PubMed Google Scholar) and R. C. B. K. J. Virol. PubMed Scopus Google Scholar). an regulatory in apoptosis by reovirus in cells P. J. Virol. 2000; PubMed Scopus Google Scholar) and in S.M. M.J. Han T. B. J. 2005; PubMed Scopus Google Scholar). induces in cells and in In the is protective S.M. M.J. Han T. B. J. 2005; PubMed Scopus Google and reovirus induction of and to in with the of a to S.M. M.J. Han T. B. J. 2005; PubMed Scopus Google Scholar, B. J. J. Virol. PubMed Google Scholar). by reovirus in and M.J. K. B. J. Virol. 2005; 79: PubMed Scopus Google suggesting that of reovirus-induced production are cell IRF-3 is required for induction following reovirus infection of B. J. Virol. 1999; PubMed Google Scholar). of reovirus-induced IRF-3 activation are unknown. of reovirus-induced IFN production and the interface between these pathways and apoptosis, to the viral and cellular of IFN production following reovirus infection and the functional of these pathways in reovirus replication and apoptosis The that reovirus activates IRF-3 via a mechanism on in viral RIG-I, and In RIG-I and IPS-1 are dispensable for reovirus-induced activation of NF-κB. IRF-3 reovirus in in of production of type 1 IRF-3 and IPS-1 are required for efficient induction of apoptosis following reovirus that RIG-I and IPS-1 are involved in cell death signaling responses to viral infection and a functional between innate immune activation and apoptosis. and and mouse embryo in to contain of and of cells in to contain of and of B. in IRF-3 M. H. N. M. K. K. T. M. S. N. T. 2000; Full Text Full Text PDF PubMed Scopus Google Scholar) from type 3 is a by and is to with the of a acid in the protein to and therefore of infectious subvirion with to that of T. P. S. Full Text Full Text PDF PubMed Scopus Google Scholar). reovirus second or of reovirus as J. Virol. PubMed Google Scholar). from cell and for to and PubMed Scopus Google Scholar) and in of reovirus in from an of 1 PubMed Scopus Google Scholar). by cells R. J. Virol. PubMed Google Scholar). as J. Virol. PubMed Scopus Google Scholar) and by and for IRF-3 and from from M. Y. Sato M. K. Fujita T. PubMed Scopus Google Scholar) from T. and from M. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). for IPS-1 from and for RIG-I and Mda-5 from mouse from cells with an of or in for 1 by in for as P. P. J. Virol. PubMed Scopus Google Scholar). of by in and to for IRF-3 as T. Yoneyama M. Yamaguchi K. K. Y. H. Fujita T. 6: PubMed Scopus Google Scholar). The in and with primary to in for 1 The for with and with Following the for 1 with and to cells in The cells with an of or in for 1 by in for The cells with for and with for by with in for 1 The cells with and with in for 1 The from and on The cells by a of an with an cells in with of a which or or and of which to the following the cells with reovirus in for 1 by in for RIG-I the cells with of RIG-I RIG-I, M. Kikuchi M. Natsukawa T. Shinobu N. Imaizumi T. Miyagishi M. Taira K. Akira S. Fujita T. Nat. Immunol. 2004; 5: 730-737Crossref PubMed Scopus (3136) Google or M. Kikuchi M. Natsukawa T. Shinobu N. Imaizumi T. Miyagishi M. Taira K. Akira S. Fujita T. Nat. Immunol. 2004; 5: 730-737Crossref PubMed Scopus (3136) Google of and of the cells with of or reovirus J. Virol. PubMed Google Scholar) by in the a to the cells in with an of or in for 1 by in for The cells from with in PBS, and for The and the cell RNA an RNA to the the and the following of RNA for and of 1 1 1 by products by in are in the with or of following of cells with the cells or with for and with or in for 1 The cells for in the or of or and in cell cells (106) in and with of to the of the cells of in for and with 1 of siRNA, of and of of the cells with in an of for 1 by of in which in cell the cells a second by in of and of the cells with in for 1 by of in which in in with for 1 in with PBS, and in for the and of and The cells and by of viral by cells R. J. Virol. PubMed Google Scholar). to the following is the of by in the with reovirus The of apoptotic cells of as S.M. J. Virol. PubMed Google Scholar). cells and the of cells by a of cells and with in for 1 by of in the system to the IRF-3 is following reovirus infection, for the of IRF-3 in by and for IRF-3 by a of reovirus activates P. J. Virol. 2000; PubMed Scopus Google production B. J. J. Virol. PubMed Google and induces apoptosis in cell S.M. J. Virol. PubMed Google Scholar) and in the system S.M. J. Virol. 1997; PubMed Google Scholar). In to IRF-3 and by IRF-3 in but in The kinetics of reovirus-induced activation of IRF-3 parallel kinetics of activation by reovirus P. J. Virol. 2000; PubMed Scopus Google Scholar, P. P. J. Virol. PubMed Scopus Google Scholar). IRF-3 is expressed in cell and is following viral infection, whereas is in response to IFN (12Lu R. Au W.C. Yeow W.S. Hageman N. Pitha P.M. J. Biol. Chem. 2000; 275: 31805-31812Abstract Full Text Full Text PDF PubMed Scopus (140) Google Scholar). is by in by the of reovirus in the IRF-3 activation to that is following the activation of IRF-3 in reovirus infection functional used the M. Y. Sato M. K. Fujita T. PubMed Scopus Google which the of of a used to for of in with infection and that infection induces functional In to IFN-β, several genes are directly in response to IRF-3, including and N. M.J. B. Sen G.C. S. R. J. J. Virol. PubMed Scopus Google Scholar). genes are in cells with kinetics that IRF-3 RNA from cells a of infection and for and by and in response to reovirus infection with kinetics for IRF-3 to the of of these that reovirus is a of the IRF-3 transcriptional response. activation and apoptosis virus in J. Virol. PubMed Scopus Google Scholar). virus is required for IRF-3 the of which required for of reovirus proteins J. Virol. 1997; PubMed Google on reovirus-induced IRF-3 but on IRF-3 activation by that of reovirus in is required for of IRF-3 the which and virus J. Virol. PubMed Google Scholar) In inhibit IRF-3 activation by reovirus which and for the that directly inhibit signaling pathways that activate the viral is required for IRF-3 activation by cells with and with or The as the of by PubMed Scopus Google Scholar). in to activate by suggesting that the viral is required for induction of response. of cells with which reovirus transcription PubMed Scopus Google on activation by reovirus infection that viral RNA synthesis is required for IRF-3 activation and that is to activate of to an to whereas of We that reovirus is and to induce IRF-3 following reovirus We the known signal pathways viral RNA to RNA RIG-I and Mda-5, viral RNA and signal through the protein IPS-1 to activate Tank-binding kinase 1 and that phosphorylate IRF-3 S. B.R. N. R. J. Science. 2003; PubMed Scopus Google Scholar). these helicases are required for IRF-3 activation by used the which the caspase activation and recruitment domain of RIG-I required for signaling to IPS-1 M. Kikuchi M. Natsukawa T. Shinobu N. Imaizumi T. Miyagishi M. Taira K. Akira S. Fujita T. Nat. Immunol. 2004; 5: 730-737Crossref PubMed Scopus (3136) Google and which a in in the domain M. Kikuchi M. Natsukawa T. Shinobu N. Imaizumi T. Miyagishi M. Taira K. Akira S. Fujita T. Nat. Immunol. 2004; 5: 730-737Crossref PubMed Scopus (3136) Google Scholar). of RIG-I activation following reovirus infection in with of by both reovirus infection and whereas by but by suggesting of RIG-I in the response by between RIG-I and Mda-5 in reovirus-induced IRF-3 of protein RNA cells with a or for RIG-I or Mda-5 to infection with of (RIG-I) and by of for RIG-I IRF-3 activation by reovirus infection In for Mda-5 on reovirus-induced IRF-3 in cells for RIG-I by of reovirus that RIG-I is required for activation following reovirus the protein IPS-1 is involved in reovirus-induced IRF-3 cells with for IPS-1 to reovirus IPS-1 IRF-3 activation following reovirus infection by the as RIG-I for IPS-1 IRF-3 activation following of these that reovirus activates IRF-3 via a on RIG-I and RIG-I and IPS-1 activate both IRF-3 and in response to viral RNA M. Kikuchi M. Natsukawa T. Shinobu N. Imaizumi T. Miyagishi M. Taira K. Akira S. Fujita T. Nat. Immunol. 2004; 5: 730-737Crossref PubMed Scopus (3136) Google Scholar, T. Takahashi K. Sato S. Coban C. Kumar H. Kato H. Ishii K.J. Takeuchi O. Akira S. Nat. Immunol. 2005; 6: 981-988Crossref PubMed Scopus (2032) Google Scholar). a signaling RIG-I and IPS-1 is required for activation by for the to following reovirus of RIG-I activation following reovirus infection in to IRF-3 reovirus-induced and activation by but that by tumor necrosis In with these an for RIG-I or IPS-1 on activation by reovirus and but an for IPS-1 activation by an reovirus-induced activation by a of in the or of IPS-1 that reovirus activates via a mechanism that is of RIG-I and We to the functional of IRF-3 activation on reovirus these used from in IRF-3 M. H. N. M. K. K. T. M. S. N. T. 2000; Full Text Full Text PDF PubMed Scopus Google Scholar). We reovirus a of viral replication following infection an of and as by on of or following in IRF-3 or IRF-3 IRF-3 activation has on reovirus a replication IRF-3 the of reovirus to in cell multiple of infection, IRF-3 and IRF-3 an of 1 and a of and reovirus in IRF-3 in with following infection of IRF-3 IRF-3 the of reovirus to to cells in an the to IFN is with IFN by in of IRF-3 and IRF-3 following IRF-3 required for production of IFN-α and following reovirus infection A and that the in IFN production for the in virus in IRF-3 IRF-3 with and with in the in IRF-3 with reovirus and and of interferon reovirus in IRF-3 to to in IRF-3 suggesting that the of reovirus by IRF-3 is by the production of type 1 The IFN has been in the of reovirus to induce apoptosis in cell S.M. B. M.J. J. Virol. 2006; PubMed Scopus Google Scholar) and in S.M. M.J. Han T. B. J. 2005; PubMed Scopus Google Scholar). the of IRF-3 in reovirus-induced apoptosis, the of reovirus to induce apoptosis in IRF-3 and IRF-3 In with IRF-3 reovirus of apoptosis in IRF-3 as by in cell and of cells the of the signaling in apoptosis by the of reovirus to induce activation in cells with for by reovirus infection in cells with an IPS-1 in with with a signaling by reovirus infection is by IPS-1 and Innate immune of viral infection initiates signaling pathways that viral replication and viral that viral initiates cellular responses via RIG-I, IPS-1, and IRF-3, which function to reovirus-induced apoptosis. that RIG-I is the primary of reovirus infection in cells and The efficient of by RIG-I that Mda-5 for RIG-I in of reovirus infection in these the IFN response to reovirus is in cells and from Mda-5 L. S. M. B. R. M. M. S. A. 2006; PubMed Scopus Google Scholar). is that other sensors function to recognize reovirus in cell reovirus induces IFN in cells R. B. and M. J. in for a cell in which RIG-I is (2Sumpter R.J. Loo Y.M. Foy E. Li K. Yoneyama M. Fujita T. Lemon S.M. Gale M.J. J. Virol. 2005; 79: 2689-2699Crossref PubMed Scopus (734) Google Scholar). RIG-I recognizes on single- or double-stranded RNA (5Hornung V. Ellegast J. Kim S. Brzozka K. Jung A. Kato H. Poeck H. Akira S. Conzelmann K.K. Schlee M. Endres S. Hartmann G. Science. 2006; 314: 994-997Crossref PubMed Scopus (1909) Google Scholar, 6Pichlmair A. Schulz O. Tan C.P. Naslund T.I. Liljestrom P. Weber F. Reis e Sousa C. Science. 2006; 314: 997-1001Crossref PubMed Scopus (1779) Google Scholar). RNAs are the Y. S. A.J. S. A. PubMed Scopus Google and therefore these RNAs as by In reovirus RNAs an A.J. J. Mol. Biol. PubMed Scopus Google suggesting that the as the reovirus RIG-I synthesis is to PubMed Scopus Google suggesting that RNAs have to the by is that of reovirus in to of the viral and of both and the of reovirus enhances IFN suggesting that the PubMed Scopus Google Scholar). small RNA with reovirus S. A. PubMed Scopus Google Scholar) the following viral with Other cellular including L. R. Nature. PubMed Scopus Google Scholar) and E. K. J. N.S. Williams B.R. Cell. Full Text PDF PubMed Scopus Google to and function in antiviral signaling pathways initiated in response to reovirus is expressed by cells M. D. N. G. A. R. C. G. P. A. J. Immunol. 2000; PubMed Scopus Google a variety of cells E. 2000; PubMed Scopus Google and and in the system M. R. D. J. Exp. PubMed Scopus Google Scholar). to that is from the extracellular L. R. Nature. PubMed Scopus Google Scholar). used in including M. K. M. H. M. Y. Yamamoto A. T. J. Immunol. 2003; PubMed Scopus Google suggesting that is required for IFN production by is known reovirus through in cell in which is responds to by to inhibit protein synthesis M.J. A. J. 1997; PubMed Scopus Google Scholar). is by reovirus and cellular protein synthesis following infection with of reovirus Scopus Google Scholar, C. J. Biol. Chem. Full Text PDF PubMed Google Scholar, Williams B.R. Silverman R.H. J. Virol. 2005; 79: PubMed Scopus Google Scholar). as is by IFN, these are of IFN and to the innate immune of and are following reovirus infection a to the activation of IRF-3 P. J. Virol. 2000; PubMed Scopus Google Scholar, P. P. J. Virol. PubMed Scopus Google Scholar). by reovirus contain and P. P. J. Virol. PubMed Scopus Google Scholar). other are reovirus infection, and are required for reovirus-induced apoptosis P. J. Virol. 2000; PubMed Scopus Google suggesting that the activation of is for cell death activation requires the and of the P. P. J. Virol. PubMed Scopus Google in to the activation of which requires and Y. M. T. M. R. M. J. Exp. Med. 1999; 189: PubMed Scopus Google Scholar). The signal transducers that reovirus to the are engagement of RIG-I and IPS-1 activates by M. Kikuchi M. Natsukawa T. Shinobu N. Imaizumi T. Miyagishi M. Taira K. Akira S. Fujita T. Nat. Immunol. 2004; 5: 730-737Crossref PubMed Scopus (3136) Google Scholar, T. Takahashi K. Sato S. Coban C. Kumar H. Kato H. Ishii K.J. Takeuchi O. Akira S. Nat. Immunol. 2005; 6: 981-988Crossref PubMed Scopus (2032) Google that reovirus activates of RIG-I and The reovirus protein is to induce apoptosis expressed in cell A. Kim K. J. Virol. 2006; PubMed Scopus Google in reovirus-induced We that a cellular kinase that activates or the directly to mediate are in to by which reovirus activates NF-κB. of IRF-3, in to NF-κB, as signaling in the cell death response to reovirus infection several by which these proteins direct an apoptotic One possibility is that these are by the production of type I IRF-3 and NF-κB, with activating transcription factor-2/c-Jun, the promoter and production (1Mogensen T.H. Paludan S.R. J. Mol. Med. 2005; 83: 180-192Crossref PubMed Scopus (106) Google Scholar). Type I IFNs proapoptotic via the induction of proteins such as Fas and 2′,5′-oligoadenylate synthase, which direct apoptotic signaling (14Selleri C. Sato T. Del Vecchio L. Luciano L. Barrett A.J. Rotoli B. Young N.S. Maciejewski J.P. Blood. 1997; PubMed Google Scholar, Li K. R.J. J. Exp. Med. 1997; PubMed Scopus Google Scholar). production in response to reovirus infection a protective in in and in by viral replication S.M. M.J. Han T. B. J. 2005; PubMed Scopus Google Scholar, M.J. K. B. J. Virol. 2005; 79: PubMed Scopus Google Scholar). to apoptosis of viral replication that possibility is that and proapoptotic signaling is transcription factors induce genes that have proapoptotic functions N. M.J. B. Sen G.C. S. R. J. J. Virol. PubMed Scopus Google Scholar, S.M. B. M.J. J. Virol. 2006; PubMed Scopus Google Scholar, S. 2004; PubMed Scopus Google Scholar). IRF-3 directly induces of tumor necrosis factor-related apoptosis-inducing ligand M. P.M. J. Virol. 2005; 79: PubMed Scopus Google which reovirus-induced apoptosis in cell P. S.M. S. C. J. Virol. 2000; PubMed Scopus Google Scholar). The mechanism by which reovirus induces apoptosis on that MOI, IRF-3 has on virus but enhances apoptosis, whereas MOI, IRF-3 reovirus spread. that IRF-3 has a functions reovirus infection; MOI, IRF-3 signaling apoptosis, whereas MOI, IRF-3 signaling induces type 1 IFNs to viral to surrounding to the and of the IRF-3 IRF-3 activation by reovirus requires RIG-I, and In RIG-I and IPS-1 are dispensable for reovirus-induced activation of NF-κB. IRF-3 and IPS-1 are required for efficient induction of apoptosis following reovirus is the of the of RIG-I and IPS-1 in cell death signaling in response to a In the of IRF-3, reovirus-induced apoptosis is and viral replication is suggesting that apoptosis as an antiviral host to reovirus apoptosis is a of reovirus S.M. J. Virol. 1997; PubMed Google Scholar) and R. C. B. K. J. Virol. PubMed Scopus Google in the possibility that are used to in the these a for innate immune response that apoptosis is an of innate We of for and D. N. K. G. and R. for and with

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.089
Threshold uncertainty score0.713

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.053
GPT teacher head0.336
Teacher spread0.283 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations116
Published2007
Admission routes2
Has abstractyes

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Same venueJournal of Biological ChemistrySame topicViral gastroenteritis research and epidemiologyFrench-language works237,207