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Record W2083801826 · doi:10.1109/bibe.2007.4375553

Cooperative Partitional-Divisive Clustering and Its Application in Gene Expression Analysis

2007· article· en· W2083801826 on OpenAlexaff
Rasha Kashef, Mohamed S. Kamel

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGene expression and cancer classification
Canadian institutionsUniversity of Waterloo
Fundersnot available
KeywordsCluster analysisCorrelation clusteringComputer scienceCURE data clustering algorithmSingle-linkage clusteringData miningConsensus clusteringData stream clusteringCanopy clustering algorithmFuzzy clusteringClustering high-dimensional dataArtificial intelligencePattern recognition (psychology)

Abstract

fetched live from OpenAlex

Clustering techniques organize a collection of objects into cohesive groups called clusters such that objects in the same cluster are more similar to each other than objects in different clusters. There are many clustering approaches proposed in the literature with different quality/complexity tradeoffs. Combining multiple clustering is an approach to overcome the deficiency of single algorithms and further enhance their performances. Current approaches to combining multiple clusterings use end-result cooperation (e.g. ensemble clustering and hybrid clustering) between the clustering algorithms. Inherent drawbacks of the end-result cooperation are: the computational complexity of ensemble clustering and the idle wasted time in the hybrid approaches. In this paper, the k-means and the bisecting k-means clustering algorithms are both combined using intermediate-cooperation strategy for the aim of obtaining better clustering solutions than non-cooperative algorithms. Undertaken experimental results show that the quality of the clustering solutions obtained from the cooperative partitional-divisive clustering (CPDC) model is better than those obtained from the non-cooperative algorithms over a number of gene expression datasets.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.215
Threshold uncertainty score0.260

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.283
Teacher spread0.271 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations12
Published2007
Admission routes1
Has abstractyes

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