Salmonella enterica serovar Typhimurium effector SigD/SopB is membrane-associated and ubiquitinated inside host cells
Why this work is in the frame
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Bibliographic record
Abstract
SigD/SopB is an effector protein translocated into host cells by one of the type III secretion systems of Salmonella enterica serovar Typhimurium (serovar Typhimurium). It is an inositol phosphatase that has activity towards several inositol phospholipids in vitro, including phosphatidylinositol 3,4,5- triphosphate. SigD activates Akt in epithelial cells and indirectly activates Cdc42 through one of its products, inositol 1,4,5,6-tetrakisphosphate. As phospholipid targets of SigD activity are localized to host cell membranes, we sought to investigate the intracellular localization of translocated SigD. We show here that SigD is a membrane-associated protein that is ubiquitinated inside host cells. SigD was extracted from host cell membranes with a high pH buffer but not by high salt. Fractionation and deletion analysis using transfected SigD-green fluorescent protein fusions revealed that amino acid residues 117-167 of SigD are essential for membrane association, and that a fragment containing residues 29-116 was ubiquitinated. This is the first direct evidence of a bacterial effector protein being ubiquitinated. Treatment of cells with the proteasome inhibitor MG-132 revealed that, unlike the host cell protein inhibitor of nuclear factor kappa B (IkappaBalpha), SigD does not appear to be rapidly degraded by the proteasome. We speculate that ubiquitination serves to downregulate SigD activity by an alternative mechanism, such as by targeting it for lysosomal degradation.
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.001 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it