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Record W2089446402 · doi:10.1212/wnl.0b013e3181e475b7

Separating the wheat from the chaff

2010· letter· en· W2089446402 on OpenAlexaff
Joachim M. Baehring, J. Gregory Cairncross

Bibliographic record

VenueNeurology · 2010
Typeletter
Languageen
FieldMedicine
TopicGlioma Diagnosis and Treatment
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsIDH1Isocitrate dehydrogenaseBiomarkerOncologyMedicinePathologyBiologyBioinformaticsMutationGeneGenetics

Abstract

fetched live from OpenAlex

Biomarkers are en vogue. Although few ever prove to be of practical value or find their place in routine clinical testing, occasionally a biomarker of great importance is identified, a biomarker that tells us something fundamental about a disease or points us to a specific therapeutic intervention. One such biomarker in neurooncology is the codeletion of chromosomal arms 1p and 19q in oligodendrogliomas, which is highly associated with classic histopathology, and as such has aided diagnosis, and, importantly, identifies a type of brain cancer that grows slowly and responds to treatment. The recent discovery of a somatic mutation in isocitrate dehydrogenase genes (IDH) in infiltrative gliomas likewise stands out, predicting a favorable clinical outcome and shedding light on the molecular pathogenesis of these neoplasms. In this issue of Neurology ®, Labussiere et al.1 make the remarkable observation that 1p and 19q allelic loss is invariably associated with IDH mutations. In a cohort of 764 gliomas, those with codeletion of chromosome 1p and 19q had mutations of either IDH1 (92%) or IDH2 (8%), whereas only one third of tumors with variable partial deletions of 1p and 19q, …

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.025
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.023
Threshold uncertainty score0.026

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.025
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0010.001
Science and technology studies0.0030.008
Scholarly communication0.0050.016
Open science0.0010.003
Research integrity0.0230.038
Insufficient payload (model declined to judge)0.0070.007

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.264
Teacher spread0.245 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2010
Admission routes1
Has abstractyes

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