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Record W2089791405 · doi:10.1139/g08-101

Allopolyploidization reduces alternative splicing efficiency for transcripts of the wheat<i>DREB2</i>homolog,<i>WDREB2</i>

2009· article· en· W2089791405 on OpenAlexvenueno aff
Akihiro Terashima, Shigeo Takumi

Bibliographic record

VenueGenome · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA Research and Splicing
Canadian institutionsnot available
Fundersnot available
KeywordsPolyploidBiologyRNA splicingAlternative splicingGenePloidyAbiotic stressGeneticsSplicing factorPrecursor mRNAGene expressionMessenger RNARNA

Abstract

fetched live from OpenAlex

The wheat DREB2 homolog, WDREB2, encodes an EREBP/AP2-type transcription factor that activates downstream Cor/Lea genes and plays important roles in abiotic stress responses. WDREB2 expression is posttranscriptionally regulated by alternative splicing. In this study, the alternative splicing patterns of WDREB2 transcripts were compared among wheats of different ploidy levels. In diploid progenitors, alternative splicing rapidly produced functional forms from the WDREB2 transcripts and the levels of the nonfunctional form gradually decreased in response to drought stress; however, in hexaploid wheat lines, including both cultivars and synthetic lines, the nonfunctional form failed to decrease. The accumulation levels of the three spliced forms in synthetic allopolyploids were not equal to the sum of those in the parental lines. These results indicated that allopolyploidization during wheat polyploid evolution inhibited efficient alternative splicing of WDREB2 transcripts.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score0.371

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.265
Teacher spread0.252 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations37
Published2009
Admission routes1
Has abstractyes

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