Morphological criteria for recognising homology in isolated skeletal elements: comparison of traditional and morphometric approaches in conodonts
Bibliographic record
Abstract
Abstract: Accurate hypotheses of primary homology are fundamental to many aspects of the systematics and palaeobiology of fossils. They are particularly critical for conodonts: virtually all areas of conodont research are underpinned by homology, yet the majority of conodont taxa are found only as disarticulated skeletal elements, and hypotheses of element homology are inferred from morphological comparisons with complete skeletons. This can cause problems in taxa where more than one location within the conodont skeleton is occupied by elements with similar morphology. In such cases, morphological comparisons can yield equivocal or erroneous hypotheses of homology of isolated elements. The Eramosa Lagerstätte of Ontario (Silurian, Wenlock) preserves both isolated skeletal elements and articulated conodont skeletons. The latter provide a topological context within which to test hypotheses of element homology and allow blind testing of qualitative discrimination of elements. When applied to P 1 and P 2 elements of Wurmiella excavata , this revealed inaccuracy and inconsistency in distinguishing these P element types. Standardised morphometric protocols were used to further test the efficacy of those characters used in traditional qualitative identification of P element homology, revealing that, individually, none of these characters provides an effective discriminator between P element types. Principal components and discriminant function analyses of ten ‘traditional’ morphological variables combined can distinguish P 1 from P 2 elements with a similar success rate to expert identification. Eigenshape and elliptic Fourier analyses of element outlines proved less effective at capturing shape differences that allowed for discrimination between P 1 and P 2 elements. Analysis of both traditional and outline data demonstrates that in some individuals P 1 and P 2 elements are morphologically distinct from one another, while in others they are almost indistinguishable. These results demonstrate that although qualitative assessments of homology can be prone to error, especially when undertaken by inexperienced researchers, the morphometric and analytical protocols used here provide effective additional tool for discriminating morphologically similar but non‐homologous elements. These methods thus hold promise of broad application to other conodont taxa where identification of element homology in collections of isolated specimens is problematic.
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.001 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".