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Record W2090838220 · doi:10.1101/sqb.2013.77.014738

A Rolling Stone Gathers No Moss, but Resistant Plants Must Gather Their MOSes

2012· review· en· W2090838220 on OpenAlexaff
Kaeli Johnson, Oliver Xiaoou Dong, Yan Huang, Xin Li

Bibliographic record

VenueCold Spring Harbor Symposia on Quantitative Biology · 2012
Typereview
Languageen
FieldAgricultural and Biological Sciences
TopicPlant-Microbe Interactions and Immunity
Canadian institutionsCanada's Michael Smith Genome Sciences CentreUniversity of British Columbia
Fundersnot available
KeywordsGeneBiologyPositional cloningMutantGeneticsGenetic screenComplementationInnate immune systemEffectorSuppressorCell biologyR genePlant disease resistanceImmune system

Abstract

fetched live from OpenAlex

The detection of pathogenic microbes by plant resistance (R) proteins and the subsequent activation of R protein-mediated immunity constitute an important layer in the plant innate immune system. Most R genes encode proteins with nucleotide-binding (NB) and leucine-rich repeat (LRR) domains. The autoimmune mutant suppressor of npr1, constitutive 1 (snc1), that constitutively activates resistance signaling, is a unique model used in our laboratory to dissect the details of TIR (Toll/Interleukin1 receptor)-NB-LRR, protein-mediated defense responses. Suppressor screens of snc1 yielded 15 modifier of snc1 (mos) complementation groups containing second-site mutations, and resulted in the identification of 13 novel MOS genes via either positional cloning or T-DNA tagging. Characterizations of the mos mutants have revealed important roles for transcriptional regulation, RNA processing, protein modifications, and nucleocytoplasmic trafficking in R protein-mediated immunity. The MOS genes have taught us a great deal about the complex mechanisms surrounding R protein activation. Future in-depth genetic and biochemical analyses will further enhance our knowledge of how R proteins are deliberately activated and how specific, targeted immunity is achieved in plants.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.003
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.002
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.084
GPT teacher head0.303
Teacher spread0.220 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations51
Published2012
Admission routes1
Has abstractyes

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