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Record W2100221095 · doi:10.1139/b08-009

Genetic differentiation and admixture among<i>Festuca idahoensis</i>,<i>F. roemeri</i>, and<i>F. ovina</i>detected in AFLP, ITS, and chloroplast DNA

2008· article· en· W2100221095 on OpenAlexvenueno aff
Thomas A. Jones, Steve Larson, Barbara L. Wilson

Bibliographic record

VenueBotany · 2008
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicBotany, Ecology, and Taxonomy Studies
Canadian institutionsnot available
Fundersnot available
KeywordsBiologyAmplified fragment length polymorphismBotanyFestucaGermplasmIntergenic regionGenetic diversityPoaceaeGeneticsGenomePopulationGene

Abstract

fetched live from OpenAlex

North American forms of the Festuca ovina L. complex, Festuca idahoensis Elmer and Festuca roemeri (Pavlick) E.B. Alexeev, are distributed broadly east and narrowly west of the Cascade Mountains, respectively. The psbA-trnH and rps16-trnK chloroplast DNA intergenic sequences, 18S-5.8S-26S nuclear ribosomal DNA internal transcribed spacer (ITS) sequences, and six AFLP primer combinations were used to investigate genetic relatedness and differences among 327 plant samples from 24 F. idahoensis and 33 F. roemeri natural-source germplasm accessions, two multiple-origin F. idahoensis × F. roemeri cultivars, one apparently admixed F. ovina × F. idahoensis accession, four naturalized populations or cultivars of Eurasian-source F. ovina s. l., and several Festuca arizonica Vasey, Festuca occidentalis Hooker, and Festuca rubra L. reference accessions. The AFLP profiles of individual plants were unique, but distance-based and Bayesian model-based clustering separated AFLP genotypes into groups corresponding to taxa. Approximately 15.9% of the AFLP variation was apportioned between F. idahoensis and F. roemeri, with the remaining 61.2% and 22.9% variation maintained within and among natural-source accessions, respectively. Genetic admixture between F. idahoensis, F. roemeri, and F. ovina was detectable and DNA sequence divergence was very low in the chloroplast and ITS regions. These three taxa are genetically differentiated, but capable of hybridization.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.055
Threshold uncertainty score0.494

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.183
Teacher spread0.169 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations16
Published2008
Admission routes1
Has abstractyes

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