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Five novel anamorphic, ascomycetous yeast species associated with mushrooms and soil

2010· article· en· W2103187960 on OpenAlex
Chin-Wen Hsieh, Li-Ying Huang, Edelgard Fu-Tschin Tschen, Chin‐Feng Chang, Ching-Fu Lee

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueFEMS Yeast Research · 2010
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicYeasts and Rust Fungi Studies
Canadian institutionsnot available
FundersBeef Cattle Research CouncilNational Science Council
KeywordsBiologyCladePhylogenetic treeYeastRibosomal RNAAscomycotaBotanyPhylogeneticsBasidiomycotaMicrobiologyInternal transcribed spacerGeneGenetics

Abstract

fetched live from OpenAlex

Five novel yeast species belonging to the Kodamaea clade are proposed in this paper based on nine strains isolated from mushrooms and soil in Taiwan between 2007 and 2008. These nine yeast strains were found to represent five novel yeast species based on their D1/D2 domain sequences of the large subunit (LSU) rRNA gene and physiological characteristics. Sequence analysis of the D1/D2 domain of the LSU rRNA gene revealed that the five species are phylogenetically related to Kodamaea and Candida sp. clustered into the Kodamaea clade in the phylogenetic tree. All the species reproduced asexually, and no ascospores could be found. Therefore, the scientific names of Candida alishanica sp. nov., Candida hsintzibuensis sp. nov., Candida kaohsiungensis sp. nov., Candida lidongshanica sp. nov., and Candida smagusa sp. nov. were proposed to accommodate these strains. Strains of the first species were discovered from soil; two strains of the second species were isolated from soil and the fruiting body of a mushroom, respectively; and strains of the latter three species were recovered from fruiting bodies of mushrooms. The type strains are listed as follows: C. alishanica GY43S11(T) (=CBS 11429(T) =BCRC 23188(T) ); C. hsintzibuensis EJ7S06(T) (=CBS 11427(T) =BCRC 23183(T) ); C. kaohsiungensis GJ10M01(T) (=CBS 11435(T) =BCRC 23197(T) ); C. lidongshanica SD5S01(T) (=CBS 11426(T) =BCRC 23191(T) ); and C. smagusa EN4M03(T) (=CBS 11430(T) =BCRC 23186(T) ).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.848
Threshold uncertainty score0.544

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.291
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it