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Record W2107805181 · doi:10.3990/1.9789036533980

Sensing with colors

2012· dissertation· en· W2107805181 on OpenAlexfundno aff
F. Ungureanu

Bibliographic record

Venuenot available
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvanced biosensing and bioanalysis techniques
Canadian institutionsnot available
FundersUniversity of TwenteEuropean CommissionUniversity of Alberta
KeywordsColloidal goldAnalyteDetection limitNanotechnologyNanoparticleMicrofluidicsComputer scienceMaterials scienceBiological systemChemistryChromatographyBiology

Abstract

fetched live from OpenAlex

In this thesis, we introduce a new optical method based on gold nanoparticles as individual sensing platforms for the detection of low concentrations of analytes (DNA or proteins). Here we provide the proof of principle of the methodology in the detection of immunoreactions and determine its limit of detection. We show that with a simple colour camera we are able to detect simultaneously immunobinding on thousands of individual gold nanoparticles [92], by measuring the change in the colour of many individual nanoparticles [93]. If an amplification step is used the LOD of such a system can be boosted even more [94]. In order to get the best sensing strategies an understanding of the physical background is needed. Chapter 2 presents a review of the physical aspects of LSPR and continues with a theoretical discussion on the sensing strategies employing individual gold nanoparticles as sensing platforms. The concept of parallel detection of multiple individually addressable nanoparticles is introduced and a theoretical LOD is determined. Chapter 3 introduces a new detection method of binding events using a colour camera in a DF setup. The feasibility of this approach was tested in an adsorption assay and an immunoassay and the LOD of the method for this sensing strategy was experimentally measured. In addition, two different detection approaches are tested and their performances compared. In Chapter 4, we introduce a new sensing strategy using gold nanoparticle probes in microfluidic cells in colorimetric darkfield microscopy enabling the simultaneous sensing of hundreds of binding events of individual particles simultaneously. Here, single binding events can be observed and the results were confirmed by independent methods like Scanning Electron Microscopy. After demonstrating the proof of principle of our detection method in an unamplified protein assay and direct immunoassay, in Chapter 5 we test our setup in an amplified protein assay and determine the performances of the setup by measuring experimentally the LOD of the system. In Chapter 6, we review the main achievements presented in this thesis, and we present several future recommendations for this line of research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.034
Threshold uncertainty score0.112

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0340.013

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.266
Teacher spread0.260 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes1
Has abstractyes

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