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Record W2108816030 · doi:10.1136/ebm.10.4.101

Finding the gold in Medline: clinical queries

2005· editorial· en· W2108816030 on OpenAlexaff
R. Brian Haynes

Bibliographic record

VenueEvidence-Based Medicine · 2005
Typeeditorial
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBiomedical Text Mining and Ontologies
Canadian institutionsMcMaster University
Fundersnot available
KeywordsMEDLINEComputer scienceTreasureSearch engine indexingInformation retrievalWorld Wide WebData scienceHistoryPolitical science

Abstract

fetched live from OpenAlex

Similarly, Richard Lehman's "Evidently..." column provides links to the full text of the articles he discusses. The articles in Evidently are selected from the most relevant articles that don't quite make the list for full abstraction. As you can see, there are certainly some gems among these. For this issue, there were around 90 articles that were "b-listed" for possible inclusion in Evidently. And those came from the larger pool of several hundred articles from 100+ journals that passed our basic validity criteria (see the ''Purpose and Procedure'' for these criteria). But sadly, only around 5% of current research articles pass these basic criteria. Of course, that's the advantage of reading the EBM journal: its 2 stage filter by quality then relevance means you only see the carefully selected gems from the world's major journals.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Direct model labels (unvalidated)

Per-model category and study-design labels from the labeling rounds. They are machine output, unvalidated, and the disagreement between models ships as data. No study design here is MEDLINE-validated yet.

Model armCategoriesStudy designConfidence
gemmano category
Domain: not available · Genre: Editorial
About the Canadian research system: no · About a Canadian topic: no
Not applicablelow
gptno category
Domain: not available · Genre: Editorial
About the Canadian research system: no · About a Canadian topic: no
Not applicablehigh
models agreeAgreement compares identical category sets and study designs across arms.

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.015
metaresearch head score (Gemma)0.072
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Editorial · Consensus signal: Editorial
Teacher disagreement score0.985
Threshold uncertainty score0.082

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0150.072
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0030.002
Bibliometrics0.0110.006
Science and technology studies0.0020.002
Scholarly communication0.0090.006
Open science0.0030.002
Research integrity0.0090.012
Insufficient payload (model declined to judge)0.0140.008

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.078
GPT teacher head0.409
Teacher spread0.331 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Labeled directly by 2 models reading the full record.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEditorial

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations25
Published2005
Admission routes1
Has abstractyes

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