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Record W2113647194 · doi:10.1002/jmri.24567

How much net gain does a diagnostic imaging test provide?

2014· letter· en· W2113647194 on OpenAlexaffabout
Gilat L. Grunau, Peter Grunau, Shai Linn, Jonathon Leipsic

Bibliographic record

VenueJournal of Magnetic Resonance Imaging · 2014
Typeletter
Languageen
FieldMathematics
TopicStatistical Methods in Clinical Trials
Canadian institutionsSt. Paul's HospitalUniversity of British Columbia
Fundersnot available
KeywordsPre- and post-test probabilityDiagnostic testTest (biology)PopulationDiseasePredictive valueStatisticsMedicineHeston modelEconometricsComputer scienceInternal medicineMathematicsPediatricsEnvironmental health

Abstract

fetched live from OpenAlex

Heston 1 describes the importance of prevalence in order to judge the utility of a diagnostic test. Heston 1 recommended standardizing predictive values to a prevalence of 50%. We take this one step further and present the concept of gain of a diagnostic test and the Predictive Summary Index (PSI), which uses the prevalence of a disease in the population of interest in order to standardize the predictive values. The PSI derivation is explained, and we show that it represents the net gain in information from a diagnostic test. Heston 1 comments on an important issue when assessing diagnostics tests: the need to know the overall prevalence of the disease in the population under investigation in order to make judgment of the utility of a diagnostic test. As correctly illustrated by Heston 1, altering the pretest probability affects the posttest probability. Heston 1 suggests that a better way to present the predictive value would be to standardize it to a 50% disease prevalence in order to reduce prevalence bias when comparing diagnostic tests. We suggest taking this one step further. Why limit standardization to 50%? The new measure, the PSI 2, can be used as a relevant summary measure to show the net gain in information beyond the prevalence of the disease. The positive predictive value (PPV) could be meaningful and supply information only if it is greater than the prevalence of the disease, which could be estimated based on pretest likelihood of disease. Thus, the additional information that is obtained from a given diagnostic test is the gain in information after a positive test which is G+ = PPV − prevalence. The negative predictive value (NPV) could be meaningful and supply information only if it is greater than the prevalence of the lack of a disease (which equals 1 − the prevalence of a disease) which could be our first guess of a lack of a disease in a patient without performing any test. The gain in information after a negative test is G− = NPV− (1−prevalence). The PSI 2 takes both of these gain measures into account. PSI is calculated as: As shown, PSI is actually measuring the net gain in information (for positive and negative results) obtained for a diagnostic test beyond the prevalence of the disease. To take it one step further, in the clinical setting a False Positive Rate (FPR) of a test is FPR = 1−PPV and False Negative Rate (FNR) is FNR = 1−NPV. Thus, PSI can also be expressed as PSI = 1− (FPR+FNR). PSI is therefore a summary of the error-free diagnostic capabilities of a test for a disease or its absence. A PSI of 1 indicates an ideal test without errors in diagnosing a disease or its absence; a PSI of 0 indicates an uninformative test with an error rate that equals the diagnosis rate. PSI of −1 indicates a misleading test that always diagnoses a disease incorrectly. Based on data by Pilz et al. 3 and the example by Heston 1, we can use the data below, using cardiac magnetic resonance imaging (CMR) compared to the gold standard coronary angiography (CA) (Table 1). The sensitivity, specificity, PPV, and NPV are 84%, 55%, 20%, 96%, respectively. These predictive values are only relevant to the patient population with the overall prevalence of 38/316 = 12%. The PSI = 0.16 indicating an overall gain in information of 16%. For purposes of illustration, let's apply this to a population with prevalence of 50% using the same sensitivity and specificity. This would yield a PPV, NPV, PSI of 65%, 77%, and 0.42, respectively (thus a net gain in information of 42%). For a population with prevalence of 75% (as done in Henson 1), again using the same sensitivity and specificity, the PPV, NPV, and PSI will be 85%, 47%, and 0.32 (thus a net gain of information of 32%). As seen by this mathematical exercise, the overall gain in information from a diagnostic test is strictly dependent on prevalence. Furthermore, we suggest that the PSI is much more informative than reporting a generic standardized predictive value to an arbitrary prevalence of 50% 1, given the PSI varies based on the prevalence in the population of interest. Gilat Grunau, PhD1 Peter Grunau, MD2 Shai Linn, MD, PhD3 Jonathon Leipsic, MD1,4 1Department of Radiology University of British Columbia Vancouver, BC, Canada 2Department of Orthopedic Surgery University of British Columbia Vancouver, BC, Canada 3School of Public Health University of Haifa Haifa, Israel 4Department of Medical Imaging St Paul's Hospital Vancouver, BC, Canada

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.007
metaresearch head score (Gemma)0.437
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Meta-epidemiology (narrow), Research integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: none
Teacher disagreement score0.661
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0070.437
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0030.001
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.000
Open science0.0020.000
Research integrity0.0000.005
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.142
GPT teacher head0.430
Teacher spread0.288 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2014
Admission routes2
Has abstractyes

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