MétaCan
Menu
Back to cohort
Record W2113759438

THE EFFECT OF PHOSPHORYLATION OF MOUSE SAMHD1 ON RESTRICTION OF HIV-1 AND MURINE LEUKEMIA VIRUS INFECTIONS

2015· article· en· W2113759438 on OpenAlexfundno aff
Feifei Wang

Bibliographic record

VenueThe Knowledge Bank (The Ohio State University) · 2015
Typearticle
Languageen
FieldChemistry
TopicCarbohydrate Chemistry and Synthesis
Canadian institutionsnot available
FundersNational Cancer InstituteNational Institutes of HealthYork UniversityNational Institute of Allergy and Infectious DiseasesOhio State University
KeywordsSAMHD1VirologyLeukemiaMurine leukemia virusHuman immunodeficiency virus (HIV)ImmunologyVirusMedicineBiologyCancer researchGeneticsReverse transcriptaseRNAGene
DOInot available

Abstract

fetched live from OpenAlex

Background: The dNTPase SAMHD1 functions as an HIV-1 restriction factor in non-dividing cells by limiting intracellular dNTP levels required to complete viral reverse transcription. Phosphorylation of human SAMHD1 (hSAMHD1) at residue threonine (T) 592 by cyclin dependent kinase 1 (CDK1) and CDK2 impairs its restriction of HIV-1 infection. Mouse SAMHD1 (mSAMHD1) shares 72-74% protein sequence identity with hSAMHD1, and also restricts HIV-1 infection in non-dividing cells. However, it is unknown whether phosphorylation of mSAMHD1 regulates its restriction of retroviral infection.\nResults: We identified and confirmed that T634 is a phosphosite of mSAMHD1 in dividing cells by mass spectrometry and using a phospho-specific antibody. Using specific inhibitors of CDK1 and CDK2 decreased the level of T634 phosphorylated mSAMHD1 in dividing cells. We generated human U937 and mouse NIH3T3 cell lines stably expressing mSAMHD1 wild-type (WT), phospho-ablative (T634A) or phospho-mimetic (T634D) mutants to examine the effect of T634 phosphorylation on mSAMHD1-mediated restriction of HIV-1 or murine leukemia virus (MLV), respectively. In differentiated U937 cells, overexpression of mSAMHD1 WT or the mutants significantly restricted HIV-1 infection and reduced the intracellular dNTP levels. In dividing NIH3T3 cells, mSAMHD1 WT or the mutants modestly reduced MLV infection.\nConclusions: CDK1 and CDK2 phosphorylate T634 of mSAMHD1 in dividing cells. Restriction of HIV-1 infection in non-dividing cells and MLV infection in dividing cells by mSAMHD1 is independent of its T634 phosphorylation. Our results suggest different mechanisms of regulating retroviral restriction by hSAMHD1 and mSAMHD1.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.039
Threshold uncertainty score0.343

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.207
Teacher spread0.195 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

Explore more

Same venueThe Knowledge Bank (The Ohio State University)Same topicCarbohydrate Chemistry and SynthesisFrench-language works237,207