MétaCan
Menu
Back to cohort
Record W2125710126 · doi:10.1139/b06-067

Systematics and mating systems of two fungal pathogens of opium poppy: the heterothallic<i>Crivellia papaveracea</i>with a<i>Brachycladium penicillatum</i>asexual state and a homothallic species with a<i>Brachycladium papaveris</i>asexual state

2006· article· en· W2125710126 on OpenAlexaffvenue
Patrik Inderbitzin, R. A. Shoemaker, Nichole R. O’Neill, B. Gillian Turgeon, Mary L. Berbee

Bibliographic record

VenueCanadian Journal of Botany · 2006
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsUniversity of British ColumbiaAgriculture and Agri-Food Canada
Fundersnot available
KeywordsBiologyHeterothallicHomothallismBotanyPapaverAlternariaType speciesMating typePolyphylyConidiumGenusPhylogenetic treeGeneticsGene

Abstract

fetched live from OpenAlex

This paper presents a systematic revision of the fungal opium poppy (Papaver somniferum L.) pathogens formerly known as Pleospora papaveracea (de Not.) Sacc., along with allied asexual states formerly placed in Dendryphion . The revision is based on analysis of phylogenetic relationships, comparative morphology, and analysis of mating systems. Using morphology, 18S and ITS rDNA, we established that these species belong to the Alternaria group rather than to Pleospora, a conclusion supported by the Shimodaira–Hasegawa test. For these fungi, we erect the new genus Crivellia , with Crivellia papaveracea as type. ITS rDNA analyses suggested with moderate support Alternaria brassicicola (Schw.) Wiltshire, Alternaria japonica Yoshii, and Ulocladium alternariae (Cooke) Simmons as Crivellia’s closest relatives. Combined ITS, partial GPD and EF-1 alpha analyses confirmed earlier studies that show that asexual isolates in the Crivellia lineage of poppy pathogens represent two closely related species. Because Dendryphion was determined to be polyphyletic, the former genus Brachycladium was resurrected for B. penicillatum Corda and B. papaveris (K. Sawada) Shoemaker &amp; Inderbitzin, the Crivellia asexual states that had been in Dendryphion. Molecular and morphological comparison with isolates from field-collected ascomata and morphological comparison with the type specimen of P. papaveracea indicated that B. penicillatum , and not B. papaveris , is the anamorph of C. papaveracea. The mycelia from single conidium or single ascospore isolates, including mycelia from 14 single ascospores from one field-collected C. papaveracea ascoma, either have a MAT1-1 or MAT1-2 gene and are thus heterothallic. In contrast, each single-conidium isolate of B. papaveris has an incomplete MAT1-2 gene fused to a MAT1-1 region and is inferred to be homothallic. We speculate that ancestral MAT fusion might have led to speciation in Crivellia.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.627
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.187
Teacher spread0.180 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations47
Published2006
Admission routes2
Has abstractyes

Explore more

Same venueCanadian Journal of BotanySame topicPlant Pathogens and Fungal DiseasesFrench-language works237,207