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Record W2128201302 · doi:10.1093/ije/dym159

Assessment of cumulative evidence on genetic associations: interim guidelines

2007· review· en· W2128201302 on OpenAlexaff
John P. A. Ioannidis, Paolo Boffetta, Julian Little, T. R O'Brien, André G. Uitterlinden, Paolo Vineis, David J. Balding, Anand P. Chokkalingam, Siobhan M. Dolan, W. Dana Flanders, Julian P. T. Higgins, Mark I. McCarthy, David H. McDermott, Grier P. Page, Timothy R. Rebbeck, Daniela Seminara, Muin J. Khoury

Bibliographic record

VenueInternational Journal of Epidemiology · 2007
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsUniversity of Ottawa
FundersNational Cancer InstituteNational Institutes of HealthNational Institute of Allergy and Infectious DiseasesEuropean CommissionU.S. Department of Health and Human Services
KeywordsInterimEpidemiologyCredibilityReplication (statistics)Causal inferenceInferenceMedicineComputer sciencePathologyGeographyPolitical science

Abstract

fetched live from OpenAlex

Established guidelines for causal inference in epidemiological studies may be inappropriate for genetic associations. A consensus process was used to develop guidance criteria for assessing cumulative epidemiologic evidence in genetic associations. A proposed semi-quantitative index assigns three levels for the amount of evidence, extent of replication, and protection from bias, and also generates a composite assessment of 'strong', 'moderate' or 'weak' epidemiological credibility. In addition, we discuss how additional input and guidance can be derived from biological data. Future empirical research and consensus development are needed to develop an integrated model for combining epidemiological and biological evidence in the rapidly evolving field of investigation of genetic factors.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.106
metaresearch head score (Gemma)0.189
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.894
Threshold uncertainty score0.559

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1060.189
Meta-epidemiology (narrow)0.0030.003
Meta-epidemiology (broad)0.0090.007
Bibliometrics0.0140.009
Science and technology studies0.0010.005
Scholarly communication0.0070.006
Open science0.0120.005
Research integrity0.0130.012
Insufficient payload (model declined to judge)0.0060.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.365
GPT teacher head0.567
Teacher spread0.202 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
DomainMethods
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations549
Published2007
Admission routes1
Has abstractyes

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