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Record W2129127059 · doi:10.1128/ec.00107-09

Forward Genetics in <i>Toxoplasma gondii</i> Reveals a Family of Rhoptry Kinases That Mediates Pathogenesis

2009· review· en· W2129127059 on OpenAlexaff
L. David Sibley, Wei Qiu, Sarah J. Fentress, S. Taylor, Asis Khan, Raymond Hui

Bibliographic record

VenueEukaryotic Cell · 2009
Typereview
Languageen
FieldImmunology and Microbiology
TopicToxoplasma gondii Research Studies
Canadian institutionsStructural Genomics ConsortiumUniversity of Toronto
FundersNational Institute of Allergy and Infectious DiseasesNational Institutes of Health
KeywordsRhoptryBiologyToxoplasma gondiiKinaseGeneticsPathogenesisProtein-Serine-Threonine KinasesCell biologyComputational biologyImmunologyApicomplexaProtein kinase AProtozoal diseaseMalaria

Abstract

fetched live from OpenAlex

Toxoplasma gondii is a widespread protozoan parasite that commonly infects domestic, wild, and companion animals (8). Like related tissue coccidians, T. gondii has a complex life cycle alternating between a sexual cycle, which occurs only within enterocytes of the small intestines of cats (all members of the Felidae appear to be susceptible), and asexual propagation in a variety of warm-blooded vertebrate hosts (8). The sexual phase culminates with fecal shedding of a spore-like stage called the oocyst, which is diploid and undergoes meiosis in the environment. During the asexual cycle, the parasite interconverts between a fast-growing lytic form known as the tacyhzoite and a slow-growing, semidormant form called the bradyzoite. Tachyzoites propagate rapidly in virtually all types of nucleated cells, including macrophages, while differentiation to bradyzoites is favored in long-lived, terminally differentiated host cells (49). Tachyzoites are adept at direct migration across cellular barriers and also disseminate rapidly within leukocytes, thereby reaching sites of immune privilege such as the central nervous system and the developing fetus, where they are more likely to cause disease (2). The life cycle shows remarkable flexibility between lytic and dormant states, thus facilitating asexual transmission between intermediate hosts. This adaptation may account for the recent spread and emergence of a few dominant clonal groups within North America and Europe (46). Toxoplasma is well adapted to mammalian hosts, being transmitted by ingestion of undercooked meat harboring tissue cysts and through food and water supplies contaminated with oocysts shed from cats (8). Humans are accidental hosts of T. gondii, yet seroprevalence rates indicate high rates of chronic infection in many countries of Europe and Central and South America (16). Infections are often mild or subclinical in healthy adults; however, toxoplasmosis can present as a clinically important infection in immunocompromised patients and the developing fetus (32). In many regions of the world, toxoplasmosis remains a frequent problem in patients infected with human immunodeficiency virus, due to lack of access to effective antiviral therapy (29). Additionally, in regions such as southern Brazil, ocular toxoplasmosis often presents as a clinically severe infection in otherwise healthy adults (18). Although T. gondii is primarily an opportunistic pathogen, it has emerged as a model for study of the biology of apicomplexan parasites, a group that contains Plasmodium spp. (malaria parasites), Cryptosporidium spp., and a variety of animal pathogens. Although the life cycles of these parasites differ substantially, they share common pathways for actin-myosin-based motility, calcium-dependent secretion, and active cell invasion (41). Toxoplasma offers excellent tools for studying molecular and cell biology, forward and reverse genetics, and animal models. Hence, exploration of the molecular basis of complex traits such as pathogenesis has been feasible in this system. This review summarizes recent advances using forward genetics to identify genes involved in pathogenesis, as well as the use of reverse genetics to validate the roles of prospective candidate genes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: none
Teacher disagreement score0.003
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.041
GPT teacher head0.296
Teacher spread0.255 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations39
Published2009
Admission routes1
Has abstractyes

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