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Record W2129907572 · doi:10.1093/pcp/pcq038

The HEAT Repeat Protein ILITYHIA is Required for Plant Immunity

2010· article· en· W2129907572 on OpenAlexafffund
Jacqueline Monaghan, Xin Li

Bibliographic record

VenuePlant and Cell Physiology · 2010
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant-Microbe Interactions and Immunity
Canadian institutionsCanada's Michael Smith Genome Sciences CentreUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of CanadaUniversity of British Columbia
KeywordsArabidopsisPseudomonas syringaeBiologyGeneticsEffectorSpliceosomeProteomicsPlant ImmunitySystemic acquired resistanceInnate immune systemMutantCell biologyComputational biologyGeneRNA splicingImmune system

Abstract

fetched live from OpenAlex

Plant innate immunity is mediated in part by resistance (R) proteins that detect pathogens and mount a robust defense response to fight against infection. We previously characterized proteins in the MOS4-associated complex (MAC) that function in the regulation of plant immune responses downstream of the autoactivated R protein snc1. The MAC is a highly conserved spliceosome-associated complex homologous to the nineteen complex (NTC) in yeast and human. The availability of proteomics data sets in these organisms allowed us to systematically test the biological function of additional putative MAC proteins based on protein sequence homology and reverse genetics. In this study, we investigate the function of the GENERAL CONTROL NONDEREPRESSIBLE1 (GCN1) homolog in Arabidopsis. GCN1 was previously isolated as a novel component of the NTC in one proteomics study of the human spliceosome. We identified a single GCN1 homolog in Arabidopsis and partially characterized its function using available T-DNA insertion mutants. This locus, previously named ILITYHIA (ILA), is required for non-host and basal resistance against Pseudomonas syringae as well as resistance conditioned by specific nucleotide binding, leucine-rich repeat (NB-LRR) R proteins. Furthermore, ILA is required for systemic acquired resistance (SAR). Previous proteomic identification of MAC components in Arabidopsis did not identify ILA, and epistasis analysis between snc1 and ila revealed that ILA does not function in snc1-mediated resistance. Overall, our results show that ILA functions in immunity against bacterial infection.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.653
Threshold uncertainty score0.612

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.208
Teacher spread0.192 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations46
Published2010
Admission routes2
Has abstractyes

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