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Record W2130767371 · doi:10.1093/hmg/ddt104

Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity

2013· review· en· W2130767371 on OpenAlexafffund
Diana L. Cousminer, Diane J. Berry, Nicholas J. Timpson, Wei Ang, Elisabeth Thiering, Enda M. Byrne, H. Rob Taal, Ville Huikari, Jonathan P. Bradfield, Marjan Kerkhof, Maria M. Groen‐Blokhuis, Eskil Kreiner‐Møller, M. Marinelli, Claus Holst, Jaakko T. Leinonen, John R. B. Perry, Ida Surakka, Olli Pietiläinen, Johannes Kettunen, Verneri Anttila, Marika Kaakinen, Ulla Sovio, Anneli Pouta, Shikta Das, Vasiliki Lagou, Chris Power, Inga Prokopenko, David M. Evans, John P. Kemp, Beaté St Pourcain, Susan M. Ring, Aarno Palotie, Eero Kajantie, Clive Osmond, Terho Lehtimäki, Jorma Viikari, Mika Kähönen, Nicole M. Warrington, Stephen J. Lye, Lyle J. Palmer, Carla M. T. Tiesler, Claudia Flexeder, Grant W. Montgomery, Sarah E. Medland, Albert Hofman, Håkon Håkonarson, Mònica Guxens, Meike Bartels, Veikko Salomaa, Joanne M. Murabito, Jaakko Kaprio, Thorkild I.A. Sørensen, Ferrán Ballester, Hans Bisgaard, Dorret I. Boomsma, Gerard H. Koppelman, Struan F.A. Grant, Vincent W. V. Jaddoe, Nicholas G. Martin, Joachim Heinrich, Craig E. Pennell, Olli T. Raitakari, Johan G. Eriksson, George Davey Smith, Elina Hyppönen, Marjo‐Riitta Järvelin, Mark I. McCarthy, Samuli Ripatti, Elisabeth Widén

Bibliographic record

VenueHuman Molecular Genetics · 2013
Typereview
Languageen
FieldMedicine
TopicBirth, Development, and Health
Canadian institutionsOntario Institute for Cancer ResearchLunenfeld-Tanenbaum Research InstituteMount Sinai Hospital
FundersEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentNational Institute of Mental HealthNational Heart, Lung, and Blood InstituteNational Institute on AgingNierstichtingMedical Research CouncilTurun Yliopistollinen KeskussairaalaNational Institute for Health and Care ResearchTampereen TuberkuloosisäätiöNational Health and Medical Research CouncilNovo Nordisk FondenNational Institute of Diabetes and Digestive and Kidney DiseasesZonMwCanadian Institutes of Health ResearchNational Human Genome Research InstituteWellcome TrustNederlandse Organisatie voor Wetenschappelijk OnderzoekNational Institute on Alcohol Abuse and AlcoholismBritish Heart Foundation
KeywordsBiologyGenome-wide association studyGeneticsLongitudinal dataGenetic associationAssociation (psychology)Single-nucleotide polymorphismGenotypeGeneDemography

Abstract

fetched live from OpenAlex

The pubertal height growth spurt is a distinctive feature of childhood growth reflecting both the central onset of puberty and local growth factors. Although little is known about the underlying genetics, growth variability during puberty correlates with adult risks for hormone-dependent cancer and adverse cardiometabolic health. The only gene so far associated with pubertal height growth, LIN28B, pleiotropically influences childhood growth, puberty and cancer progression, pointing to shared underlying mechanisms. To discover genetic loci influencing pubertal height and growth and to place them in context of overall growth and maturation, we performed genome-wide association meta-analyses in 18 737 European samples utilizing longitudinally collected height measurements. We found significant associations (P < 1.67 × 10(-8)) at 10 loci, including LIN28B. Five loci associated with pubertal timing, all impacting multiple aspects of growth. In particular, a novel variant correlated with expression of MAPK3, and associated both with increased prepubertal growth and earlier menarche. Another variant near ADCY3-POMC associated with increased body mass index, reduced pubertal growth and earlier puberty. Whereas epidemiological correlations suggest that early puberty marks a pathway from rapid prepubertal growth to reduced final height and adult obesity, our study shows that individual loci associating with pubertal growth have variable longitudinal growth patterns that may differ from epidemiological observations. Overall, this study uncovers part of the complex genetic architecture linking pubertal height growth, the timing of puberty and childhood obesity and provides new information to pinpoint processes linking these traits.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Review · Consensus signal: none
Teacher disagreement score0.006
Threshold uncertainty score0.012

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.002
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.060
GPT teacher head0.336
Teacher spread0.276 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations226
Published2013
Admission routes2
Has abstractyes

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