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Record W2132085834 · doi:10.2337/db11-0973

No Interactions Between Previously Associated 2-Hour Glucose Gene Variants and Physical Activity or BMI on 2-Hour Glucose Levels

2012· review· en· W2132085834 on OpenAlexaff
Robert A. Scott, Audrey Y. Chu, Niels Grarup, Marie‐France Hivert, Dmitry Shungin, Anke Tönjes, Ajay Yesupriya, Daniel R. Barnes, Nabila Bouatia‐Naji, Nicole L. Glazer, Anne Jackson, Zoltán Kutalik, Vasiliki Lagou, Diana Marek, Laura J. Rasmussen‐Torvik, Heather M. Stringham, Toshiko Tanaka, Mette Aadahl, Dan E. Arking, Richard N. Bergman, Eric Boerwinkle, Lori L. Bonnycastle, Stefan R. Bornstein, Eric J. Brunner, Suzannah J. Bumpstead, Søren Brage, Olga D. Carlson, Han Chen, Yii‐Der Ida Chen, Peter S. Chines, Francis S. Collins, David Couper, Elaine Dennison, Nicole F. Dowling, Josephine Egan, Ulf Ekelund, Michael R. Erdos, Nita G. Forouhi, Caroline S. Fox, Mark O. Goodarzi, Jürgen Gräßler, Stefan Gustafsson, Göran Hallmans, Torben Hansen, Aroon D. Hingorani, John W. Holloway, Frank B. Hu, Bo Isomaa, Anthony James, Ingegerd Johansson, Anna Jonsson, Torben Jørgensen, Mika Kivimäki, Péter Kovács, Meena Kumari, Johanna Kuusisto, Markku Laakso, Cécile Lecœur, Claire Lévy‐Marchal, Guo Li, Ruth J. F. Loos, Valeri Lyssenko, Michael Marmot, Pedro Marques‐Vidal, Mario A. Morken, Gabriele Müller, Kari E. North, James S. Pankow, Felicity Payne, Inga Prokopenko, Bruce M. Psaty, Frida Renström, Kenneth Rice, Jerome I. Rotter, Denis Rybin, Camilla H. Sandholt, Avan Aihie Sayer, Peter Shrader, Peter Schwarz, David S. Siscovick, Alena Stančáková, Michael Stümvoll, Tanya M. Teslovich, Gérard Waeber, Gordon H. Williams, Daniel R. Witte, Andrew R. Wood, Weijia Xie, Michael Boehnke, Cyrus Cooper, Luigi Ferrucci, Philippe Froguel, Leif Groop, W.H. Linda Kao, Péter Vollenweider, Mark Walker, Richard M. Watanabe, Oluf Pedersen, James B. Meigs, Erik Ingelsson, Inês Barroso, José C. Florez, Paul W. Franks, Josée Dupuis, Nicholas J. Wareham, Claudia Langenberg

Bibliographic record

VenueDiabetes · 2012
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsUniversité de Sherbrooke
FundersNational Center for Advancing Translational SciencesNational Center for Research ResourcesNational Institute of Diabetes and Digestive and Kidney DiseasesNational Human Genome Research InstituteNational Heart, Lung, and Blood InstituteNIHR Cambridge Biomedical Research CentreSchool of Public Health, Imperial College LondonSyddansk UniversitetSamfundet FolkhälsanNovo Nordisk FondenNewcastle UniversityUniversity of OxfordWellcome TrustUniversity of Southern CaliforniaUniversity of SouthamptonKuopion Yliopistollinen SairaalaIncyteBroad InstituteCentre Hospitalier Universitaire VaudoisImperial College LondonGlaxoSmithKlineInstitut National de la Santé et de la Recherche MédicaleCedars-Sinai Medical CenterAmerican Diabetes AssociationUniversity of WashingtonDepartment of Social Services, Australian GovernmentUmeå UniversitetMassachusetts Institute of TechnologyBritish Heart FoundationUniversity of North Carolina at Chapel HillBrigham and Women's HospitalItä-Suomen YliopistoNational Institute for Health and Care ResearchUniversity of MinnesotaMassachusetts General HospitalUniversité de LausanneKarolinska Institutet
KeywordsSingle-nucleotide polymorphismSNPType 2 diabetesDiabetes mellitusInternal medicineAlleleEndocrinologyGenome-wide association studyGeneticsPolymorphism (computer science)Genetic associationGeneMedicineBiologyGenotype

Abstract

fetched live from OpenAlex

Gene-lifestyle interactions have been suggested to contribute to the development of type 2 diabetes. Glucose levels 2 h after a standard 75-g glucose challenge are used to diagnose diabetes and are associated with both genetic and lifestyle factors. However, whether these factors interact to determine 2-h glucose levels is unknown. We meta-analyzed single nucleotide polymorphism (SNP) × BMI and SNP × physical activity (PA) interaction regression models for five SNPs previously associated with 2-h glucose levels from up to 22 studies comprising 54,884 individuals without diabetes. PA levels were dichotomized, with individuals below the first quintile classified as inactive (20%) and the remainder as active (80%). BMI was considered a continuous trait. Inactive individuals had higher 2-h glucose levels than active individuals (β = 0.22 mmol/L [95% CI 0.13-0.31], P = 1.63 × 10(-6)). All SNPs were associated with 2-h glucose (β = 0.06-0.12 mmol/allele, P ≤ 1.53 × 10(-7)), but no significant interactions were found with PA (P > 0.18) or BMI (P ≥ 0.04). In this large study of gene-lifestyle interaction, we observed no interactions between genetic and lifestyle factors, both of which were associated with 2-h glucose. It is perhaps unlikely that top loci from genome-wide association studies will exhibit strong subgroup-specific effects, and may not, therefore, make the best candidates for the study of interactions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.985
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.071
GPT teacher head0.349
Teacher spread0.278 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designOther design
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations27
Published2012
Admission routes1
Has abstractyes

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