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Record W2132883779 · doi:10.1074/jbc.m302946200

Cleavage of the Matricellular Protein SPARC by Matrix Metalloproteinase 3 Produces Polypeptides That Influence Angiogenesis

2003· article· en· W2132883779 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueJournal of Biological Chemistry · 2003
Typearticle
Languageen
FieldMedicine
TopicBone and Dental Protein Studies
Canadian institutionsQueen's University
FundersNational Institute of General Medical SciencesNational Institute of Diabetes and Digestive and Kidney DiseasesNational Heart, Lung, and Blood Institute
KeywordsMatricellular proteinAngiogenesisExtracellular matrixMatrix metalloproteinaseCleavage (geology)ChemistryMolecular biologyThrombospondinCell growthCell biologyBiochemistryChorioallantoic membraneMetalloproteinaseOsteonectinDisintegrinPeptideBiologyIn vitroEnzymeCancer researchAlkaline phosphatase

Abstract

fetched live from OpenAlex

SPARC, a matricellular protein that affects cellular adhesion and proliferation, is produced in remodeling tissue and in pathologies involving fibrosis and angiogenesis. In this study we have asked whether peptides generated from cleavage of SPARC in the extracellular milieu can regulate angiogenesis. Matrix metalloproteinase (MMP)-3, but not MMP-1 or 9, showed significant activity toward SPARC. Limited digestion of recombinant human (rhu)SPARC with purified catalytic domain of rhuMMP-3 produced three major fragments, which were sequenced after purification by HPLC. Three synthetic peptides (Z-1, and from were in of angiogenesis. a a by and in the In peptides and in a and in the were in a in a of or of SPARC by produced peptides that regulate in in a of peptides a angiogenesis. SPARC, a matricellular protein that affects cellular adhesion and proliferation, is produced in remodeling tissue and in pathologies involving fibrosis and angiogenesis. In this study we have asked whether peptides generated from cleavage of SPARC in the extracellular milieu can regulate angiogenesis. Matrix metalloproteinase (MMP)-3, but not MMP-1 or 9, showed significant activity toward SPARC. Limited digestion of recombinant human (rhu)SPARC with purified catalytic domain of rhuMMP-3 produced three major fragments, which were sequenced after purification by HPLC. Three synthetic peptides (Z-1, and from were in of angiogenesis. a a by and in the In peptides and in a and in the were in a in a of or of SPARC by produced peptides that regulate in in a of peptides a angiogenesis. matricellular a of that and the extracellular extracellular extracellular recombinant of by tissue of extracellular extracellular recombinant of by tissue of of this SPARC and and and and of the extracellular of that and the In of proliferation, of the matricellular of the matricellular have not of in the of a of or SPARC, and have in by SPARC and SPARC the of and the of and the of in Matrix SPARC by of the in and with and which SPARC is by and of and Matrix SPARC the of and and in Matrix the of in of SPARC by of with and of with a SPARC in the of the of matricellular in is the of peptides from by tissue In the of SPARC, synthetic peptides in of the three have of the that with proliferation, and of in from SPARC by and this were cleavage in the of the study we have asked whether of the with in SPARC with that regulate or of in a the of by which of in and of in have that SPARC three major fragments, the of which peptides with of in of the and of in In a the but in and but a we have that peptides from SPARC that with a of and a the a in human SPARC with a with the of from of a a of were by with that the by a from in and catalytic domain of human the and the domain in from purified and a from of with with in digestion were a by by the of the of of the digestion a that by the of the by from the were by and were of of were that and were a in that by peptides were by with from the and and protein were by and were purified by HPLC. and were by In peptides with and of and in peptides cleavage of human by in the of human SPARC of the and in in by in the of human SPARC of the and in in in a and were and by the of were by in and were in were in and peptides were from of the the were with and were by in of were by a of three and were by the of or of were in in the or of and the were in and were a of three were and in and of and in a of of were in tissue of were and by of the of with with in a of with rhuMMP-3 or in in a of were a from were after which were in and were were and were by from of SPARC, after by were and were of this of SPARC were a which a of is and protein and not with SPARC by the were from have a of of SPARC, of which and of Matrix of synthetic peptides of SPARC of the SPARC, and or and which of SPARC of the synthetic peptides were a or a with a and the and peptides of SPARC with of in we whether or of were in and whether of SPARC a of tissue In this study we have asked the peptides generated from the cleavage of SPARC by that the of and the of SPARC in the of of SPARC by is of with three and that angiogenesis. but not MMP-1 or 9, catalytic activity toward SPARC. cleavage of SPARC by and by of of SPARC a by a of the which a and is in and in of with in and and by that this is the of SPARC, a by and In but not MMP-1 or 9, activity toward SPARC. of the from SPARC of and a with the of major cleavage of SPARC produced by digestion that we this of in a of were by a in and and were by and from this in and in the of the protein from with the of the protein is from of the domain of SPARC. In the and of from and which but of the digestion of by of and of and and of from and and of SPARC peptides produced by by with a peptides were a by by with a peptides and from that from and In in of and in and that and is a of the that human of in the of produced in which is in the of produced in which is in the of produced in which is in a is a of SPARC the major produced by the cleavage of SPARC by of SPARC, by in domain and in domain domain the is not in in of and in in is domain by and produced by cleavage of SPARC by from of domain of which is is the domain which is the extracellular domain the of a the of the recombinant protein by of with in cleavage and the in of by cleavage the in in that is in a the in and we or the of synthetic and in peptides of in and in a of with a and in the and and of that peptides of major cleavage of and a in the with in a of and and the and which a In peptides and in the that were not significant not in the were with or SPARC of and in and the were and of by in and of SPARC were with in the of of peptides and in a with a a of the with in the In peptides and in the in this with a a activity in is that the of a this which showed activity in the and and of SPARC peptides were with a of of SPARC peptides and by of cellular of by with and the of from of three peptides and and of were in with of peptides and or in or and of the In and in the and and peptides and in the which in the and of peptides and the with of the peptides the of a of and of or with were not not were with of SPARC peptides of were the of with peptides or a of in or of by in and of the of peptides and and SPARC and the peptides and from the of SPARC by in of and of SPARC of with in and and in major produced by cleavage of with in peptides in of SPARC peptides and in and in this study we have that the matricellular protein SPARC can in a by a that by Limited digestion of with produced three major peptides that and and study of and we of and and and a of in of and angiogenesis. the a by in and but not the of In and and but with and were in the of angiogenesis. major peptides of SPARC proliferation, and in a of of the and the have regulate Matrix In from and have activity in and in in of the matricellular which in of remodeling and tissue peptides that or in and in and SPARC of the is the of the from SPARC, which and in and in the is that of the that from of the digestion of SPARC with produced a cleavage peptides and of the of SPARC peptides were not and of the that of the of SPARC of not a of this of SPARC by in the of a in and and the but from the synthetic this adhesion In the of a synthetic in this the with but in and the this is not of is a activity this in of SPARC domain with of is the SPARC of this have in Matrix we the of the domain and the in the of the synthetic a and a a the of by with and and in of In the the we a by which and a of in the by a the of of a of of in the of the and of SPARC adhesion and with the of peptides in the of a of a of of activity In we a of SPARC three of a of in of a the of in study of the the that proliferation, that is of the domain of SPARC or with the of SPARC in of the in and adhesion and of with or the with in the of SPARC a that the of in of peptides in this study of the and the of but a from which of study by a that but not and in the with a of and that in the of in the of tissue and remodeling have that the of the of in in tissue of that were by of In that were in but a in in with in the of of by can in a of tissue in which of activity with that the of of and of tissue a the of that the of or a in the of or a of SPARC. matricellular a of and In SPARC, of were in and in remodeling and cleavage of by and adhesion and the that we we not cleavage of or by MMP-1 or with but from of in by of human and of by and by in protein from and and in the of and have in and purification showed activity with a we the the and cleavage of SPARC by a after peptides in study were generated this cleavage of SPARC by or of the in from the and the the of this of SPARC in the of SPARC, and the have cleavage of SPARC produced by a a a in the protein peptides and but in and of SPARC of have in and Matrix with SPARC a and in and is that the of the is the and of and of the matricellular have in the of in is not whether SPARC or of SPARC in the of angiogenesis. the of and a the of is that the of and or SPARC can regulate the the and of of the the in a tissue or and the of of the a but matricellular a of that and the extracellular extracellular extracellular recombinant of by tissue of extracellular extracellular recombinant of by tissue of of this SPARC and and and and of the extracellular of that and the In of proliferation, of the matricellular of the matricellular have not of in the of a of or SPARC, and have in by SPARC and SPARC the of and the of and the of in Matrix SPARC by of the in and with and which SPARC is by and of and Matrix SPARC the of and and in Matrix the of in of SPARC by of with and of with a SPARC in the of the of matricellular in is the of peptides from by tissue In the of SPARC, synthetic peptides in of the three have of the that with proliferation, and of in from SPARC by and this were cleavage in the of In the study we have asked whether of the with in SPARC with that regulate or of in a the of by which of in and of in have that SPARC three major fragments, the of which peptides with of in of the and of in In a the but in and but a we have that peptides from SPARC that with a of and a the a in human SPARC with a with the of from of a a of were by with that the by a from in and catalytic domain of human the and the domain in from purified and a from of with with in digestion were a by by the of the of of the digestion a that by the of the by from the were by and were of of were that and were a in that by peptides were by with from the and and protein were by and were purified by HPLC. and were by In peptides with and of and in peptides cleavage of human by in the of human SPARC of the and in in by in the of human SPARC of the and in in in a and were and by the of were by in and were in were in and peptides were from of the the were with and were by in of were by a of three and were by the of or of were in in the or of and the were in and were a of three were and in and of and in a of of were in tissue of were and by of the of with with in a of with rhuMMP-3 or in in a of were a from were after which were in and were were and were by from of SPARC, after by were and were of this of SPARC were a which a of is and protein and not with SPARC by the were human SPARC with a with the of from of a a of were by with that the by a from in and catalytic domain of human the and the domain in from purified and a from of with with in digestion were a by by the of the of of the digestion a that by the of the by from the were by and were of of were that and were a in that by peptides were by with from the and and protein were by and were purified by HPLC. and were by In peptides with and of and in and were and by the of were by in and were in were in and peptides were from of the the were with and were by in of were by a of three and were by the of or of were in in the or of and the were in and were a of three were and in and of and in a of of were in tissue of were and by of the of with with in a of with rhuMMP-3 or in in a of were a from were after which were in and were were and were by from of SPARC, after by were and were of this of SPARC were a which a of is and protein and not with SPARC by the were from have a of of SPARC, of which and of Matrix of synthetic peptides of SPARC of the SPARC, and or and which of SPARC of the synthetic peptides were a or a with a and the and peptides of SPARC with of in we whether or of were in and whether of SPARC a of tissue In this study we have asked the peptides generated from the cleavage of SPARC by that the of and the of SPARC in the of of SPARC by is of with three and that angiogenesis. but not MMP-1 or 9, catalytic activity toward SPARC. cleavage of SPARC by and by of of SPARC a by a of the which a and is in and in of with in and and by that this is the of SPARC, a by and In but not MMP-1 or 9, activity toward SPARC. of the from SPARC of and a with the of major cleavage of SPARC produced by digestion that we this of in a of were by a in and and were by and from this in and in the of the protein from with the of the protein is from of the domain of SPARC. In the and of from and which but of the digestion of by of and of and and of from and of in the of produced in which is in the of produced in which is in the of produced in which is in a is a of SPARC the major produced by the cleavage of SPARC by of SPARC, by in domain and in domain domain the is not in in of and in in is domain by and produced by cleavage of SPARC by from of domain of which is is the domain which is the extracellular domain the of a the of the recombinant protein by of with in cleavage and the in of by cleavage the in in that is in a the in and we or the of synthetic and in peptides of in and in a of with a and in the and and of that peptides of major cleavage of and a in the with in a of and and the and which a In peptides and in the that were not significant not in the were with or SPARC of and in and the were and of by in and of SPARC were with in the of of peptides and in a with a a of the with in the In peptides and in the in this with a a activity in is that the of a this which showed activity in the and and of SPARC peptides were with a of of SPARC peptides and by of cellular of by with and the of from of three peptides and and of were in with of peptides and or in or and of the In and in the and and peptides and in the which in the and of peptides and the with of the peptides the of a of and of or with were not not were with of SPARC peptides of were the of with peptides or a of in or of by in and of the of peptides and and SPARC and the peptides and from the of SPARC by in of and of SPARC of with in and and in major produced by cleavage of with in peptides in of SPARC peptides and in and in from have a of of SPARC, of which and of Matrix of synthetic peptides of SPARC of the SPARC, and or and which of SPARC of the synthetic peptides were a or a with a and the and peptides of SPARC with of in we whether or of were in and whether of SPARC a of tissue In this study we have asked the peptides generated from the cleavage of SPARC by that the of and the of SPARC in the of of SPARC by is of with three and that angiogenesis. but not MMP-1 or 9, catalytic activity toward SPARC. cleavage of SPARC by and by of of SPARC a by a of the which a and is in and in of with in and and by that this is the of SPARC, a by and In but not MMP-1 or 9, activity toward SPARC. of the from SPARC of and a with the of major cleavage of SPARC produced by digestion that we this of in a of were by a in and and were by and from this in and in the of the protein from with the of the protein is from of the domain of SPARC. In the and of from and which but of the digestion of by of and of and and of from and is a of SPARC the major produced by the cleavage of SPARC by of SPARC, by in domain and in domain domain the is not in in of and in in is domain by and SPARC a the in and we or the of synthetic and in peptides of in and in a of with a and in the and and of that peptides of major cleavage of and a in the with in a of and and the and which a In peptides and in the that were not significant not and of SPARC were with in the of of peptides and in a with a a of the with in the In peptides and in the in this with a a activity in is that the of a this which showed activity in the and SPARC and of were in with of peptides and or in or and of the In and in the and and peptides and in the which in the and of peptides and the with of the peptides the of a of and of or with were not not were with of the of peptides and and SPARC and the peptides and from the of SPARC by in this study we have that the matricellular protein SPARC can in a by a that by Limited digestion of with produced three major peptides that and and study of and we of and and and a of in of and angiogenesis. the a by in and but not the of In and and but with and were in the of angiogenesis. major peptides of SPARC proliferation, and in a of of the and the have regulate Matrix In from and have activity in and in in of the matricellular which in of remodeling and tissue peptides that or in and in and SPARC of the is the of the from SPARC, which and in and in the is that of the that from of the digestion of SPARC with produced a cleavage peptides and of the of SPARC peptides were not and of the that of the of SPARC of not a of this of SPARC by in the of a in and and the but from the synthetic this adhesion In the of a synthetic in this the with but in and the this is not of is a activity this in of SPARC domain with of is the SPARC of this have in Matrix we the of the domain and the in the of the synthetic a and a a the of by with and and in of In the the we a by which and a of in the by a the of of a of of in the of the and of SPARC adhesion and with the of peptides in the of a of a of of activity In we a of SPARC three of a of in of a the of in study of the the that proliferation, that is of the domain of SPARC or with the of SPARC in of the in and adhesion and of with or the with in the of SPARC a that the of in of peptides in this study of the and the of but a from which of study by a that but not and in the with a of and that in the of in the of tissue and remodeling have that the of the of in in tissue of that were by of In that were in but a in in with in the of of by can in a of tissue in which of activity with that the of of and of tissue a the of that the of or a in the of or a of SPARC. matricellular a of and In SPARC, of were in and in remodeling and cleavage of by and adhesion and the that we we not cleavage of or by MMP-1 or with but from of in by of human and of by and by in protein from and and in the of and have in and purification showed activity with a we the the and cleavage of SPARC by a after peptides in study were generated this cleavage of SPARC by or of the in from the and the the of this of SPARC in the of SPARC, and the have cleavage of SPARC produced by a a a in the protein peptides and but in and of SPARC of have in and Matrix with SPARC a and in and is that the of the is the and of and of the matricellular have in the of in is not whether SPARC or of SPARC in the of angiogenesis. the of and a the of is that the of and or SPARC can regulate the the and of of the the in a tissue or and the of of the a but In this study we have that the matricellular protein SPARC can in a by a that by Limited digestion of with produced three major peptides that and and study of and we of and and and a of in of and angiogenesis. the a by in and but not the of In and and but with and were in the of angiogenesis. major peptides of SPARC proliferation, and in a of of the and the have regulate Matrix In from and have activity in and in in of the matricellular which in of remodeling and tissue peptides that or in and in and SPARC of the is the of the from SPARC, which and in and in the is that of the that from of the SPARC. Limited digestion of SPARC with produced a cleavage peptides and of the of SPARC peptides were not and of the that of the of SPARC of not a of this of SPARC by in the of a in and and the but from the synthetic this adhesion In the of a synthetic in this the with but in and the this is not of is a activity this in SPARC. of SPARC domain with of is the SPARC of this have in Matrix we the of the domain and the in the of the synthetic a and a a the of by with and and in of In the the we a by which and a of in the by a the of of a of of in the of the and of SPARC adhesion and with the of peptides in the of a of a of of activity In we a of SPARC three of a of in of a the of in study of the the that proliferation, that is of the domain of SPARC or with the of SPARC in of the in and adhesion and of with or the with in the of SPARC a that the of in of peptides in this study of the and the of but a from which of study by a that but not and in the with a of and that in the of in the of tissue and remodeling have that the of the of in in tissue of that were by of In that were in but a in in with in the of of by can in a of tissue in which of activity with that the of of and of tissue a the of that the of or a in the of or a of SPARC. matricellular a of and In SPARC, of were in and in remodeling and cleavage of by and adhesion and the that we we not cleavage of or by MMP-1 or with but from of in by of human and of by and by in protein from and and in the of and have in and purification showed activity with a we the the and cleavage of SPARC by a after peptides in study were generated this cleavage of SPARC by or of the in from the and the the of this of SPARC in the of SPARC, and the have cleavage of SPARC produced by a a a in the protein peptides and but in and of SPARC of have in and Matrix with SPARC a and in and is that the of the is the and of and of the matricellular have in the of in is not whether SPARC or of SPARC in the of angiogenesis. the of and a the of is that the of and or SPARC can regulate the the and of of the the in a tissue or and the of of the a but and the of the with the and of is with the

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.018
Threshold uncertainty score0.379

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.251
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it