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Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape

2014· article· en· 478 citations· W2134957137 on OpenAlex· 10.1038/nbt.2798

Why is this work in the frame?

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

Canadian funderA Canadian agency funded it. The work may carry no Canadian affiliation at all.

No Canadian affiliation. An affiliation-only frame — the usual design — would never have seen this work. It is one of the works that make the case for inverting the frame.

Machine scores (provisional)

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Opus teacher head0.003
GPT teacher head0.194
Teacher spread
0.191 · how far apart the two teachers sit on this one work
Validation status
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Abstract

No abstract. This is not a gap in this database — OpenAlex has none either. 23.3% of the frame is in this state, and the screen finds HALF as much metaresearch here, so the absence is a measured bias rather than a missing field.

The record

Venue
Nature Biotechnology
Topic
Genomics and Chromatin Dynamics
Field
Biochemistry, Genetics and Molecular Biology
Canadian institutions
Funders
Institute of GeneticsNational Institute of Dental and Craniofacial ResearchCommon FundNational Institute of Biomedical Imaging and BioengineeringNational Institute of Diabetes and Digestive and Kidney DiseasesNational Institute of Neurological Disorders and StrokeHarvard Stem Cell InstituteNational Institutes of HealthNational Human Genome Research InstituteMassachusetts Institute of Technology
Keywords
ChromatinChromatin immunoprecipitationTranscription factorBiologyComputational biologyPopulationBinding siteGenomeDNase I hypersensitive siteGeneticsDeoxyribonuclease IGenePromoterGene expressionBase sequence
Has abstract in OpenAlex
no