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A First Assessment of Mitochondrial DNA Variation and Geographic Distribution of Haplotypes in Hessian fly (Diptera: Cecidomyiidae)

2004· article· en· W2147040723 on OpenAlexaboutno aff
Alisha J. Johnson, Brandon J. Schemerhorn, R. H. Shukle

Bibliographic record

VenueAnnals of the Entomological Society of America · 2004
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicInsect symbiosis and bacterial influences
Canadian institutionsnot available
FundersPurdue UniversityU.S. Department of Agriculture
KeywordsBiologyCecidomyiidaeHaplotypeMitochondrial DNAPopulationGeneticsMidgePhylogenetic treeEvolutionary biologyZoologyGallGeneEcologyGenotype

Abstract

fetched live from OpenAlex

Domain III of the mitochondrial 12S rRNA gene from Hessian fly, Mayetiola destructor (Say), was sequenced in 21 populations from the United States, two populations from Canada, five populations from the Mediterranean basin, one population from Southwest Asia, and one population from New Zealand. From the total alignment, seven unique mitochondrial DNA (mtDNA) sequences (haplotypes) were identified. Of the seven 12S haplotypes only three (haplotypes 1, 2, and 3) occurred in populations from North America, indicating these were most likely the introduced haplotypes. Haplotypes were not restricted to any given biotype of M. destructor as defined by virulence to resistance genes in wheat. Thus, neutral markers did not show structure based on biotype. Populations of M. destructor showed a predominance of one haplotype over the others in specific geographic regions. However, Wolbachia DNA was not detected in any population, indicating that inheritance patterns of mtDNA in M. destructor were most likely due to repeated bottlenecks leading to the expansion of one lineage over another. The complete complement of 12S sequences in the M. destructor populations was subjected to a phylogenetic reconstruction by using haplotypes 1 and 3 of the gall midge Orseolia oryzae (Wood-Mason), as outgroups. Results from this initial study indicate a more robust phylogenetic reconstruction and analysis of population history will test the hypothesis of a single introduction of M. destructor into North America.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.260
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations15
Published2004
Admission routes1
Has abstractyes

Explore more

Same venueAnnals of the Entomological Society of AmericaSame topicInsect symbiosis and bacterial influencesFrench-language works237,207