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Record W2147465745 · doi:10.1371/journal.pone.0043099

Creation of an Open-Access, Mutation-Defined Fibroblast Resource for Neurological Disease Research

2012· article· en· W2147465745 on OpenAlexaff
Selina Wray, Matthew W. Self, Patrick A. Lewis, Jan‐Willem Taanman, Natalie S. Ryan, Colin Mahoney, Yuying Liang, Michael J. Devine, Una‐Marie Sheerin, Henry Houlden, Huw R. Morris, Daniel G. Healy, J.F. Martí-Massó, Elisavet Preza, Suzanne Barker, Margaret Sutherland, Roderick A. Corriveau, Michael R. D’Andrea, Anthony H.V. Schapira, Ryan J. Uitti, Mark Guttman, Grzegorz Opala, Barbara Jasińska‐Myga, Andreas Puschmann, Christer Nilsson, Alberto J. Espay, Jarosław Sławek, Ludwig Gutmann, Bradley F. Boeve, Khrista Boylan, A. Jon Stoessl, Owen A. Ross, Nicholas J. Maragakis, Jay Van Gerpen, Melissa Gerstenhaber, Katrina Gwinn, Ted M. Dawson, Ole Isacson, Karen Marder, Lorraine N. Clark, Serge Przedborski, Steven Finkbeiner, Jeffrey D. Rothstein, Zbigniew K. Wszołek, Martin N. Rossor, John Hardy

Bibliographic record

VenuePLoS ONE · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPluripotent Stem Cells Research
Canadian institutionsUniversity of British ColumbiaCentre for Movement Disorders
FundersNational Institute of Neurological Disorders and StrokeMedical Research CouncilUniversity of California, IrvineNational Institutes of HealthFeinberg School of MedicineAlzheimer's SocietyUniversity of SheffieldWellcome TrustUniversity College LondonCedars-Sinai Medical CenterUniversity at BuffaloUniversity of DundeeUniversity of PennsylvaniaHarvard UniversityNorthwestern UniversityMcLean HospitalParkinson's Disease FoundationMichael J. Fox Foundation for Parkinson's ResearchJohns Hopkins UniversityCardiff UniversityMayo ClinicParkinson's UKCHDI FoundationNational Institute for Health and Care ResearchMassachusetts General Hospital
KeywordsDiseaseInduced pluripotent stem cellMutationMedicineBioinformaticsNeuroscienceBiologyGeneGeneticsPathologyEmbryonic stem cell

Abstract

fetched live from OpenAlex

Our understanding of the molecular mechanisms of many neurological disorders has been greatly enhanced by the discovery of mutations in genes linked to familial forms of these diseases. These have facilitated the generation of cell and animal models that can be used to understand the underlying molecular pathology. Recently, there has been a surge of interest in the use of patient-derived cells, due to the development of induced pluripotent stem cells and their subsequent differentiation into neurons and glia. Access to patient cell lines carrying the relevant mutations is a limiting factor for many centres wishing to pursue this research. We have therefore generated an open-access collection of fibroblast lines from patients carrying mutations linked to neurological disease. These cell lines have been deposited in the National Institute for Neurological Disorders and Stroke (NINDS) Repository at the Coriell Institute for Medical Research and can be requested by any research group for use in in vitro disease modelling. There are currently 71 mutation-defined cell lines available for request from a wide range of neurological disorders and this collection will be continually expanded. This represents a significant resource that will advance the use of patient cells as disease models by the scientific community.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.068
Threshold uncertainty score0.329

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.144
GPT teacher head0.387
Teacher spread0.243 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations141
Published2012
Admission routes1
Has abstractyes

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Same venuePLoS ONESame topicPluripotent Stem Cells ResearchFrench-language works237,207