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Genetic Parameters for a Multiple-Trait Multiple-Lactation Random Regression Test-Day Model in Italian Holsteins

2007· article· en· W2148693622 on OpenAlexaff
B.L. Muir, G.J. Kistemaker, J. Jamrozik, F. Canavesi

Bibliographic record

VenueJournal of Dairy Science · 2007
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and phenotypic traits in livestock
Canadian institutionsUniversity of GuelphHolstein Association of Canada
Fundersnot available
KeywordsSireHeritabilityStatisticsRandom effects modelHerdMathematicsGibbs samplingAnimal scienceGenetic correlationTraitBiologyBayesian probabilityGenetic variationGenetics

Abstract

fetched live from OpenAlex

The objectives of this study were to estimate variance components for test-day milk, fat, and protein yields and average daily SCS in 3 subsets of Italian Holsteins using a multiple-trait, multiple-lactation random regression test-day animal model and to determine whether a genetic heterogeneous variance adjustment was necessary. Data were test-day yields of milk, fat, and protein and SCS (on a log2 scale) from the first 3 lactations of Italian Holsteins collected from 1992 to 2002. The 3 subsets of data included 1) a random sample of Holsteins from all herds in Italy, 2) a random sample of Holsteins from herds using a minimum of 75% foreign sires, and 3) a random sample of Holsteins from herds using a maximum of 25% foreign sires. Estimations of variances and covariances for this model were achieved by Bayesian methods using the Gibbs sampler. Estimated 305-d genetic, permanent environmental, and residual variance was higher in herds using a minimum of 75% foreign sires compared with herds using a maximum of 25% foreign sires. Estimated average daily heritability of milk, fat, and protein yields did not differ among subsets. Heritability of SCS in the first lactation differed slightly among subsets and was estimated to be the highest in herds with a maximum of 25% foreign sire use (0.19 +/- 0.01). Genetic correlations across lactations for milk, fat, and protein yields were similar among subsets. Genetic correlations across lactations for SCS were 0.03 to 0.08 higher in herds using a minimum of 75% or a maximum of 25% foreign sires, compared with herds randomly sampled from the entire population. Results indicate that adjustment for heterogeneous variance at the genetic level based on the percentage of foreign sire use should not be necessary with a multiple-trait random regression test-day animal model in Italy.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.718
Threshold uncertainty score0.471

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.281
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations85
Published2007
Admission routes1
Has abstractyes

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