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Molecular cloning of Pit‐1 cDNA and genomic DNA of the domestic duck (<i>Anas platyrhynchos</i>)

2007· article· en· W2149146368 on OpenAlex
Norio Kansaku, T. Ohkubo, Daniel D. Guemene, U. Kühnlein, D. Zadworny

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueAnimal Science Journal · 2007
Typearticle
Languageen
FieldMedicine
TopicGrowth Hormone and Insulin-like Growth Factors
Canadian institutionsMcGill University
FundersJapan Society for the Promotion of Science
KeywordsComplementary DNABiologyRapid amplification of cDNA endsgenomic DNAGene isoformMolecular biologyGeneExonIntronPrimer (cosmetics)Molecular cloningCloning (programming)GeneticsChemistry

Abstract

fetched live from OpenAlex

ABSTRACT The expression of unique isoform of pituitary transcription factor (Pit‐1) is reported in the chicken and turkey. However, it is not well known whether this isoform is expressed in the other avian species. In the present study, complementary DNA (cDNA) and genomic DNA, of Pit‐1 of domesticated duck, were cloned and sequenced. Duck Pit‐1α was found to have 93.3, and 92.4% sequence identity at the cDNA level to Pit‐1α of chicken and turkey, respectively. The predicted amino acid sequence had 96.7% similarity with a comparable region of Pit‐1α of both chicken and turkey. Based on the cDNA sequence, the genomic structure of the gene was characterized. The duck Pit‐1 gene consisted of seven exons and six introns. Sequence analysis of the duck Pit‐1 gene allowed for the design of a forward primer for amplification of Pit‐1γ, which is synthesized from an alternative transcription initiation site in galliforms. Reverse transcription of total RNA followed by polymerase chain reaction successively amplified a 984 bp product of Pit‐1γ cDNA, which encoded a peptide of 326 amino acids. These results suggest that the expression of Pit‐1 isoform originates from a different site of transcription initiation, which is not unique to galliforms but is observed in other avian species including anseriforms.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.632
Threshold uncertainty score0.314

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.272
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it