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Record W2149832383 · doi:10.1111/jbi.12042

Phylogeographical patterns in the widespread arctic–alpine plant <i>Bistorta vivipara</i> (Polygonaceae) with emphasis on western North America

2012· article· en· W2149832383 on OpenAlexafffund
Kendrick L. Marr, Geraldine A. Allen, Richard J. Hebda, Laurie J. McCormick

Bibliographic record

VenueJournal of Biogeography · 2012
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicClimate change and permafrost
Canadian institutionsUniversity of VictoriaRoyal British Columbia Museum
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsBiologyHaplotypeGenetic diversityPopulationRange (aeronautics)Genetic structureGenetic variationEcologyEvolutionary biologyZoologyGeographyGeneticsDemographyGenotype

Abstract

fetched live from OpenAlex

Abstract Aim We investigated genetic variation in Bistorta vivipara , a widespread Northern Hemisphere tundra species, to infer patterns of migration and where it may have survived during the Last Glacial Maximum ( LGM ). Location Samples came primarily from western North America, with a few from the Arctic and Eurasia. Methods We sequenced two chloroplast DNA spacer regions, trn H –psb A and trn S – G, in individuals from 199 populations and mapped haplotype distributions and their relationships using a haplotype network. We calculated genetic and molecular diversity statistics for the seven geographical regions from which we obtained samples. Results Fifteen haplotypes were detected, with very little divergence among them. The haplotypes are separated into two main groups by the presence or absence of a 22 bp tandem duplication. Four haplotypes are common, widespread and with substantial range overlap; 11 are rare and mostly unique to one region. Two rare haplotypes were found only in British Columbia ( BC ). Western North America and Asia have the highest levels of genetic and molecular diversity. Northern and southern BC have different haplotype complements. Main conclusions Bistorta vivipara has relatively low genetic diversity, with much less genetic structure than we expected for such a widespread species. We expected significant geographical structure due to the combined effects of genetic drift and geographical isolation. The asexual reproductive mode of B. vivipara may facilitate relatively rapid population establishment and spread compared with sexual reproduction by seed. Bistorta vivipara probably originated in Asia and spread to North America and Europe prior to the LGM . In western North America it spread to its modern distribution from Beringia and the western USA following the LGM . Populations in northern and southern BC may have different histories, possibly related to the timing and extent of glaciation. The occurrence of two unique haplotypes within BC suggests that some individuals may have survived in full glacial refugia within BC .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.029
Threshold uncertainty score0.983

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.222
Teacher spread0.201 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations34
Published2012
Admission routes2
Has abstractyes

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