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Record W2150907707 · doi:10.1002/gepi.20410

STrengthening the REporting of Genetic Association Studies (STREGA)—an extension of the STROBE statement

2009· article· en· W2150907707 on OpenAlexafffund
Julian Little, Julian P. T. Higgins, John P. A. Ioannidis, David Moher, France Gagnon, Erik von Elm, Muin J. Khoury, Barbara Cohen, Jeremy Grimshaw, Paul Scheet, Marta Gwinn, Robin E. Williamson, Guangyong Zou, Kim Hutchings, Candice Y. Johnson, Valerie Tait, Miriam Wiens, Jean Golding, Cornelia M. van Duijn, John McLaughlin, Andrew D. Paterson, George A. Wells, Isabel Fortier, Matthew L. Freedman, Maja Zečević, Richard King, Claire Infante‐Rivard, Alexandre F.R. Stewart, Nick Birkett

Bibliographic record

VenueGenetic Epidemiology · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsMcGill UniversityCancer Care OntarioLunenfeld-Tanenbaum Research InstituteRobarts Clinical TrialsWestern UniversityMcGill University and Génome Québec Innovation CentrePublic Health OntarioSickKids FoundationUniversity of TorontoUniversity of Ottawa
FundersNovartis Institutes for BioMedical ResearchInstitut pour la Recherche en Santé PubliqueWellcome TrustPublic Health Agency of CanadaCanadian Institutes of Health ResearchGenome Canada
KeywordsStrengthening the reporting of observational studies in epidemiologyPopulation stratificationChecklistObservational studyGenetic associationPopulationAssociation (psychology)Genetic epidemiologyMEDLINEPsychologyBiologyMedicineGeneticsSingle-nucleotide polymorphismEnvironmental healthGenotypePathologyCognitive psychology

Abstract

fetched live from OpenAlex

Making sense of rapidly evolving evidence on genetic associations is crucial to making genuine advances in human genomics and the eventual integration of this information in the practice of medicine and public health. Assessment of the strengths and weaknesses of this evidence, and hence the ability to synthesize it, has been limited by inadequate reporting of results. The STrengthening the REporting of Genetic Association studies (STREGA) initiative builds on the STrengthening the Reporting of OBservational Studies in Epidemiology (STROBE) Statement and provides additions to 12 of the 22 items on the STROBE checklist. The additions concern population stratification, genotyping errors, modelling haplotype variation, Hardy-Weinberg equilibrium, replication, selection of participants, rationale for choice of genes and variants, treatment effects in studying quantitative traits, statistical methods, relatedness, reporting of descriptive and outcome data, and the volume of data issues that are important to consider in genetic association studies. The STREGA recommendations do not prescribe or dictate how a genetic association study should be designed but seek to enhance the transparency of its reporting, regardless of choices made during design, conduct, or analysis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.861
metaresearch head score (Gemma)0.914
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Reporting · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.139
Threshold uncertainty score0.172

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.8610.914
Meta-epidemiology (narrow)0.0030.007
Meta-epidemiology (broad)0.0090.017
Bibliometrics0.0180.023
Science and technology studies0.0050.017
Scholarly communication0.0140.015
Open science0.0130.038
Research integrity0.0290.029
Insufficient payload (model declined to judge)0.0060.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.065
GPT teacher head0.364
Teacher spread0.300 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designNot applicable
DomainReporting
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations344
Published2009
Admission routes2
Has abstractyes

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