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Record W2155856207 · doi:10.1371/journal.pgen.1004474

Genome Wide Association Identifies Common Variants at the SERPINA6/SERPINA1 Locus Influencing Plasma Cortisol and Corticosteroid Binding Globulin

2014· review· en· W2155856207 on OpenAlexafffund
Jennifer L. Bolton, Caroline Hayward, Neşe Direk, John G. Lewis, Geoffrey L. Hammond, Lesley A. Hill, Anna Anderson, Jennifer E. Huffman, James F. Wilson, Harry Campbell, Igor Rudan, Alan F. Wright, Nicholas D. Hastie, Sarah H. Wild, Fleur P. Velders, Albert Hofman, André G. Uitterlinden, Jari Lahti, Katri Räikkönen, Eero Kajantie, Elisabeth Widén, Aarno Palotie, Johan G. Eriksson, Marika Kaakinen, Marjo‐Riitta Järvelin, Nicholas J. Timpson, George Davey Smith, Susan M. Ring, David M. Evans, Beaté St Pourcain, Toshiko Tanaka, Yuri Milaneschi, Stefania Bandinelli, Luigi Ferrucci, Pim van der Harst, Judith G.M. Rosmalen, Stephen J. L. Bakker, Niek Verweij, Robin P. F. Dullaart, Anubha Mahajan, Cecilia M. Lindgren, Andrew P. Morris, Lars Lind, Erik Ingelsson, Laura N. Anderson, Craig E. Pennell, Stephen J. Lye, Stephen G. Matthews, Joel Eriksson, Dan Mellström, Claes Ohlsson, Jackie F. Price, Mark W. J. Strachan, Rebecca M. Reynolds, Henning Tiemeier, Brian R. Walker

Bibliographic record

VenuePLoS Genetics · 2014
Typereview
Languageen
FieldMedicine
TopicHormonal Regulation and Hypertension
Canadian institutionsUniversity of TorontoLunenfeld-Tanenbaum Research InstituteMount Sinai HospitalUniversity of British Columbia
FundersNational Institute of Mental HealthNational Heart, Lung, and Blood InstituteNational Institute on AgingBiocenter, University of OuluCanadian Institutes of Health ResearchNovo Nordisk FondenUppsala UniversitetOulun YliopistoMedical Research CouncilSigne ja Ane Gyllenbergin SäätiöHjärt-LungfondenNovo NordiskJuho Vainion SäätiöNational Health and Medical Research CouncilEmil Aaltosen SäätiöVetenskapsrådetMinistero della SaluteUniversity of BristolNierstichtingStiftelsen för Strategisk ForskningAkademiska SjukhusetAcademy of FinlandWomen and Infants Research FoundationRaine Medical Research FoundationCurtin University of TechnologyHelsingin YliopistoEuropean CommissionBristol-Myers SquibbRoyal SocietyScottish GovernmentBritish Heart FoundationNederlandse Organisatie voor Wetenschappelijk OnderzoekWellcome TrustEuropean Science Foundation
KeywordsTranscortinBiologyGenome-wide association studyHeritabilityGeneticsSingle-nucleotide polymorphismGenetic variationLocus (genetics)Quantitative trait locusEndocrinologyInternal medicineGlobulinGeneGenotypeMedicine

Abstract

fetched live from OpenAlex

Variation in plasma levels of cortisol, an essential hormone in the stress response, is associated in population-based studies with cardio-metabolic, inflammatory and neuro-cognitive traits and diseases. Heritability of plasma cortisol is estimated at 30-60% but no common genetic contribution has been identified. The CORtisol NETwork (CORNET) consortium undertook genome wide association meta-analysis for plasma cortisol in 12,597 Caucasian participants, replicated in 2,795 participants. The results indicate that <1% of variance in plasma cortisol is accounted for by genetic variation in a single region of chromosome 14. This locus spans SERPINA6, encoding corticosteroid binding globulin (CBG, the major cortisol-binding protein in plasma), and SERPINA1, encoding α1-antitrypsin (which inhibits cleavage of the reactive centre loop that releases cortisol from CBG). Three partially independent signals were identified within the region, represented by common SNPs; detailed biochemical investigation in a nested sub-cohort showed all these SNPs were associated with variation in total cortisol binding activity in plasma, but some variants influenced total CBG concentrations while the top hit (rs12589136) influenced the immunoreactivity of the reactive centre loop of CBG. Exome chip and 1000 Genomes imputation analysis of this locus in the CROATIA-Korcula cohort identified missense mutations in SERPINA6 and SERPINA1 that did not account for the effects of common variants. These findings reveal a novel common genetic source of variation in binding of cortisol by CBG, and reinforce the key role of CBG in determining plasma cortisol levels. In turn this genetic variation may contribute to cortisol-associated degenerative diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Review · Consensus signal: none
Teacher disagreement score0.006
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.041
GPT teacher head0.294
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations161
Published2014
Admission routes2
Has abstractyes

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