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Record W2157589122 · doi:10.1371/journal.pgen.1002298

Identification, Replication, and Fine-Mapping of Loci Associated with Adult Height in Individuals of African Ancestry

2011· review· en· W2157589122 on OpenAlexafffund
Amidou N’Diaye, Gary K. Chen, Cameron D. Palmer, Bing Ge, Bamidele O. Tayo, Rasika A. Mathias, Jingzhong Ding, Michael A. Nalls, Adebowale Adeyemo, Véronique Adoue, Christine B. Ambrosone, Larry D. Atwood, Elisa V. Bandera, Lewis C. Becker, Sonja I. Berndt, Leslie Bernstein, William J. Blot, Eric Boerwinkle, Angela Britton, Graham Casey, Stephen J. Chanock, Ellen W. Demerath, Sandra L. Deming, W. Ryan Diver, Caroline S. Fox, Tamara B. Harris, Dena Hernández, Jennifer J. Hu, Sue A. Ingles, Esther M. John, Craig Johnson, Brendan J. Keating, Rick A. Kittles, Laurence N. Kolonel, Stephen B. Kritchevsky, Loı̈c Le Marchand, Kurt Lohman, Jiankang Liu, Robert C. Millikan, Adam B. Murphy, Solomon K. Musani, Christine Neslund‐Dudas, Kari E. North, Sarah J. Nyante, Adesola Ogunniyi, Elaine A. Ostrander, George Papanicolaou, Sanjay R. Patel, Curtis A. Pettaway, Michael F. Press, Susan Redline, Jorge L. Rodriguez‐Gil, Charles N. Rotimi, Benjamin A. Rybicki, Babatunde Salako, Pamela J. Schreiner, Lisa B. Signorello, Andrew B. Singleton, Janet L. Stanford, Alex Stram, Daniel O. Stram, Sara S. Strom, Bhoom Suktitipat, Michael J. Thun, John S. Witte, Lisa R. Yanek, Regina G. Ziegler, Wei Zheng, Xiaofeng Zhu, Joseph M. Zmuda, Alan B. Zonderman, Michele K. Evans, Ching‐Ti Liu, Diane M. Becker, Tomi Pastinen, Brian E. Henderson, Joel N. Hirschhorn, Guillaume Lettre, Christopher A. Haiman

Bibliographic record

VenuePLoS Genetics · 2011
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsUniversité de MontréalMcGill University and Génome Québec Innovation CentreMontreal Heart Institute
FundersMedical Research and Materiel CommandEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentNational Institute of Environmental Health SciencesNational Institute of Diabetes and Digestive and Kidney DiseasesNational Institute of General Medical SciencesNational Institute of Nursing ResearchNational Cancer InstituteNational Institute on AgingNational Center on Minority Health and Health DisparitiesNational Human Genome Research InstituteNational Heart, Lung, and Blood InstituteCanadian Institutes of Health ResearchU.S. Department of DefenseDepartment of Chemicals and Petrochemicals, Ministry of Chemicals and Fertilizers, IndiaU.S. Public Health ServiceVanderbilt UniversityNational Institutes of HealthMinisterio de Economía y CompetitividadVanderbilt-Ingram Cancer CenterMarch of Dimes FoundationAmerican Cancer SocietyBreast Cancer Research FoundationNational Institute on Minority Health and Health DisparitiesNational Center for Research ResourcesU.S. Army
KeywordsBiologySingle-nucleotide polymorphismGeneticsGenome-wide association studyGenetic genealogyHeritabilityGenetic associationEvolutionary biologyGeneGenotypeDemographyPopulation

Abstract

fetched live from OpenAlex

Adult height is a classic polygenic trait of high heritability (h(2) approximately 0.8). More than 180 single nucleotide polymorphisms (SNPs), identified mostly in populations of European descent, are associated with height. These variants convey modest effects and explain approximately10% of the variance in height. Discovery efforts in other populations, while limited, have revealed loci for height not previously implicated in individuals of European ancestry. Here, we performed a meta-analysis of genome-wide association (GWA) results for adult height in 20,427 individuals of African ancestry with replication in up to 16,436 African Americans. We found two novel height loci (Xp22-rs12393627, P = 3.4×10(-12) and 2p14-rs4315565, P = 1.2×10(-8)). As a group, height associations discovered in European-ancestry samples replicate in individuals of African ancestry (P = 1.7×10(-4) for overall replication). Fine-mapping of the European height loci in African-ancestry individuals showed an enrichment of SNPs that are associated with expression of nearby genes when compared to the index European height SNPs (P<0.01). Our results highlight the utility of genetic studies in non-European populations to understand the etiology of complex human diseases and traits.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.723
Threshold uncertainty score0.943

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.062
GPT teacher head0.302
Teacher spread0.241 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations109
Published2011
Admission routes2
Has abstractyes

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