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Record W2159208695 · doi:10.1186/gm8

Race and ancestry in biomedical research: exploring the challenges

2009· article· en· W2159208695 on OpenAlexaff
Timothy Caulfield, Stephanie M. Fullerton, Sarah E. Ali‐Khan, Laura Arbour, Esteban G. Burchard, Billie-Jo Hardy, Simrat Harry, Robyn Hyde-Lay, Jonathan Kahn, Rick A. Kittles, Barbara A. Koenig, Sandra SJ Lee, Michael J. Malinowski, Vardit Ravitsky, Pamela Sankar, Stephen W. Scherer, Béatrice Séguin, Darren Shickle, Guilherme Suarez‐Kurtz, Abdallah S. Daar

Bibliographic record

VenueGenome Medicine · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRace, Genetics, and Society
Canadian institutionsGenome CanadaCentre for Global Health ResearchSickKids FoundationUniversity Health NetworkUniversity of TorontoHospital for Sick ChildrenUniversity of British ColumbiaUniversity of Alberta
FundersNational Institute on Drug Abuse
KeywordsRace (biology)TerminologyVariety (cybernetics)Context (archaeology)Human genetic variationHuman geneticsEngineering ethicsVariation (astronomy)MedicineData scienceSociologyBiologyComputer scienceHuman genomeGenetics

Abstract

fetched live from OpenAlex

The use of race in biomedical research has, for decades, been a source of social controversy. However, recent events, such as the adoption of racially targeted pharmaceuticals, have raised the profile of the race issue. In addition, we are entering an era in which genomic research is increasingly focused on the nature and extent of human genetic variation, often examined by population, which leads to heightened potential for misunderstandings or misuse of terms concerning genetic variation and race. Here, we draw together the perspectives of participants in a recent interdisciplinary workshop on ancestry and health in medicine in order to explore the use of race in research issue from the vantage point of a variety of disciplines. We review the nature of the race controversy in the context of biomedical research and highlight several challenges to policy action, including restrictions resulting from commercial or regulatory considerations, the difficulty in presenting precise terminology in the media, and drifting or ambiguous definitions of key terms.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.241
metaresearch head score (Gemma)0.194
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Science and technology studies
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.977
Threshold uncertainty score0.936

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.2410.194
Meta-epidemiology (narrow)0.0010.002
Meta-epidemiology (broad)0.0050.002
Bibliometrics0.0090.011
Science and technology studies0.0230.149
Scholarly communication0.0390.061
Open science0.0070.030
Research integrity0.0280.035
Insufficient payload (model declined to judge)0.0050.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.158
GPT teacher head0.358
Teacher spread0.200 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations132
Published2009
Admission routes1
Has abstractyes

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