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Record W2164738046 · doi:10.1371/journal.pone.0051314

mMaple: A Photoconvertible Fluorescent Protein for Use in Multiple Imaging Modalities

2012· article· en· W2164738046 on OpenAlexafffund
Ann McEvoy, Hiofan Hoi, Mark Bates, Evgenia Platonova, Paula J. Cranfill, Michelle A. Baird, Michael W. Davidson, Helge Ewers, Jan Liphardt, Robert E. Campbell

Bibliographic record

VenuePLoS ONE · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvanced Fluorescence Microscopy Techniques
Canadian institutionsUniversity of Alberta
FundersBasic Energy SciencesNational Institute of General Medical SciencesNatural Sciences and Engineering Research Council of CanadaOffice of ScienceHolcim Stiftung zur Förderung der Wissenschaftlichen FortbildungÉcole Polytechnique Fédérale de LausanneU.S. Department of EnergyEuropean Molecular Biology OrganizationNational Cancer InstituteNational Institutes of HealthNational Science Foundation
KeywordsMicroscopyConfocal microscopyFluorescence microscopeFörster resonance energy transferFluorescenceFluorescence-lifetime imaging microscopyFluorescent proteinConfocalResolution (logic)Yellow fluorescent proteinBiophysicsLive cell imagingGreen fluorescent proteinEscherichia coliCell biologyChemistryBiologyCellOpticsComputer scienceBiochemistryPhysicsArtificial intelligence

Abstract

fetched live from OpenAlex

Recent advances in fluorescence microscopy have extended the spatial resolution to the nanometer scale. Here, we report an engineered photoconvertible fluorescent protein (pcFP) variant, designated as mMaple, that is suited for use in multiple conventional and super-resolution imaging modalities, specifically, widefield and confocal microscopy, structured illumination microscopy (SIM), and single-molecule localization microscopy. We demonstrate the versatility of mMaple by obtaining super-resolution images of protein organization in Escherichia coli and conventional fluorescence images of mammalian cells. Beneficial features of mMaple include high photostability of the green state when expressed in mammalian cells and high steady state intracellular protein concentration of functional protein when expressed in E. coli. mMaple thus enables both fast live-cell ensemble imaging and high precision single molecule localization for a single pcFP-containing construct.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.048
GPT teacher head0.266
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations154
Published2012
Admission routes2
Has abstractyes

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Same venuePLoS ONESame topicAdvanced Fluorescence Microscopy TechniquesFrench-language works237,207