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Record W2166030543 · doi:10.1002/ijc.29018

<i>MC1R</i> variants increased the risk of sporadic cutaneous melanoma in darker‐pigmented <scp>C</scp>aucasians: A pooled‐analysis from the M‐SKIP project

2014· article· en· W2166030543 on OpenAlexafffund
Elena Pasquali, José C. García‐Borrón, Maria Concetta Fargnoli, Sara Gandini, Patrick Maisonneuve, Vincenzo Bagnardi, Claudia Specchia, Fan Liu, Manfred Kayser, Tamar Nijsten, Eduardo Nagore, Rajiv Kumar, Johan Hansson, Peter A. Kanetsky, Paola Ghiorzo, Tadeusz Dębniak, Wojciech Branicki, Nelleke A. Gruis, Jiali Han, Terry Dwyer, L Blizzard, Maria Teresa Landi, Giuseppe Palmieri, Gloría Ribas, Alexander J. Stratigos, Philippe Autier, Julian Little, Julia Newton‐Bishop, Francesco Sera, Sara Raimondi

Bibliographic record

VenueInternational Journal of Cancer · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
Topicmelanin and skin pigmentation
Canadian institutionsUniversity of Ottawa
FundersNational Institutes of HealthUniversità degli Studi dell'AquilaNational and Kapodistrian University of AthensPomorski Uniwersytet Medyczny W SzczecinieAssociazione Italiana per la Ricerca sul CancroINCLIVA Instituto de Investigación SanitariaUniversità degli Studi di GenovaUniversidad de MurciaKarolinska InstitutetCancer Research UKMenzies Research Institute TasmaniaLeids Universitair Medisch CentrumDeutsches KrebsforschungszentrumUniversiteit LeidenUniversity of LeedsMenzies Institute for Medical ResearchMoffitt Cancer CenterUniversity of OttawaNational Cancer InstituteBrigham and Women's Hospital
KeywordsMelanomaOdds ratioMedicineEye colorPhenotypeRelative riskGenotypeDermatologySkin cancerRisk factorInternal medicineCancerGeneticsConfidence intervalBiologyGeneCancer research

Abstract

fetched live from OpenAlex

The MC1R gene is a key regulator of skin pigmentation. We aimed to evaluate the association between MC1R variants and the risk of sporadic cutaneous melanoma (CM) within the M-SKIP project, an international pooled-analysis on MC1R, skin cancer and phenotypic characteristics. Data included 5,160 cases and 12,119 controls from 17 studies. We calculated a summary odds ratio (SOR) for the association of each of the nine most studied MC1R variants and of variants combined with CM by using random-effects models. Stratified analysis by phenotypic characteristics were also performed. Melanoma risk increased with presence of any of the main MC1R variants: the SOR for each variant ranged from 1.47 (95%CI: 1.17-1.84) for V60L to 2.74 (1.53-4.89) for D84E. Carriers of any MC1R variant had a 66% higher risk of developing melanoma compared with wild-type subjects (SOR; 95%CI: 1.66; 1.41-1.96) and the risk attributable to MC1R variants was 28%. When taking into account phenotypic characteristics, we found that MC1R-associated melanoma risk increased only for darker-pigmented Caucasians: SOR (95%CI) was 3.14 (2.06-4.80) for subjects with no freckles, no red hair and skin Type III/IV. Our study documents the important role of all the main MC1R variants in sporadic CM and suggests that they have a direct effect on melanoma risk, independently on the phenotypic characteristics of carriers. This is of particular importance for assessing preventive strategies, which may be directed to darker-pigmented Caucasians with MC1R variants as well as to lightly pigmented, fair-skinned subjects.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.005
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.007
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.267
Teacher spread0.261 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations115
Published2014
Admission routes2
Has abstractyes

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