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Record W2167082098 · doi:10.1093/neuonc/not174

CELL BIOLOGY AND SIGNALING

2013· article· en· W2167082098 on OpenAlexaff
Manu Agarwal, Ryo Nitta, Sinisa Dovat, Jean Mosser, Hideyuki Arita, Y. Narita, Shoji Fukushima, Kensuke Tateishi, Yasuhiko Matsushita, Akihiko Yoshida, Y. Miyakita, Masuo Ohno, V. Peter Collins, N. Kawahara, S. Shibui, K. Ichimura, Suzana Assad Kahn, Sharareh Gholamin, Marie‐Pierre Junier, Hervé Chneiweiss, I. Weissman, S. Mitra, S. Cheshier, Tony Avril, Abderrahmane Hamlat, Pierre‐Jean Le Reste, Véronique Quillien, Cristina Carrato, L. Serrano, Lara Pijuán, C. Hostalot, S. Villà, A. Ariza, Olatz Etxániz, Carmen Balañá, Etty Benveniste, Y. Zheng, B. McFarland, Denis Drygin, Susan L. Bellis, M. Bredel, Daniela Lötsch, C. Engelmaier, Sigrid Allerstorfer, Michael Grusch, J. Pichler, Serge Weis, Johannes A. Hainfellner, C. Marosi, S. Spiegl-Kreinecker, Walter Berger, A. Bronisz, M. O. Nowicki, Yun Wang, K. Ansari, E. A. Chiocca, J. Godlewski, Kenneth Brown, Madan M. Kwatra, Timothy T. Bui, Shujia Zhu, D. Kozono, Jie Li, Deepa Kushwaha, Brendan R. Carter, Chen Chen, Jessica Schulte, M. Srikanth, Satyabrata Das, J. Zhang, J. Lathia, Liangjun Yin, J. Rich, Eric N. Olson, Jacqueline Keßler, Anjen Chenn, Allison E. Cherry, Bodo Haas, Yu‐Hao Lin, Shirlyne Ong, Nephi Stella, Christopher P. Cifarelli, Robert Griffin, Degang Cong, Weimin Zhu, Yang Shi, P. Clark, John S. Kuo, Siqi Hu, Di Sun, Markus J. Bookland, Nune Darbinian, Abhinav Dey, Mélanie Robitaille, M. Remke, Damien Faury, Carolina M. Maier, Anshu Malhotra, N. Jabado, M. Taylor, Stéphane Angers, Anna Kenney, Xiaomin Ren, Haiyi Zhou, M. Schur, A. S. Baweja, M. Singh, A. Erdreich-Epstein, Junliang Fu, D. Koul, J. Yao, N. Saito, S. Zheng, R. Verhaak, Zhipeng Lu, W. K. A. Yung, German G. Gomez, S. Volinia, Carlo M. Croce, C. Brennan, W. Cavenee, F. Furnari, Sergio G. López, Dongmei Qu, C. Petritsch, Marisol González-Huarriz, Guillermo Aldave, Dashnamoorthy Ravi, Alicia Rubio, R. Diez-Valle, Miguel Marigil, Paula Jauregi, B. Vera, Arlet Acanda de la Rocha, S. Tejada-Solis, M. M. Alonso, U. Gopal, John D. Isaacs, Mariella Gruber‐Olipitz, Swati Dabral, S. Ramkissoon, Ada H. C. Kung, Ekaterina Pak, Jae-Wook Chung, Michael Theisen, Yao Sun, Val Monrose, Yoko Franchetti, David S. Shulman, Navid Redjal, Barbara Tabak, R. Beroukhim, Jiangyue Zhao, Silvia Buonamici, Keith L. Ligon, Jerome Kelleher, Robert Segal, David A. Canton, Paola Monterroso Díaz, J. Thad Scott, Kieko Hara, Teruyoshi Kageji, Yoshifumi Mizobuchi, Keiko T. Kitazato, Tatsuma Okazaki, T. Fujihara, K. Nakajima, H. Mure, Kenji Kuwayama, Tomonori Hara, S. Nagahiro, Lydia Hill, Hannah Botfield, Kismet Hossain-Ibrahim, Angela Logan, G. Cruickshank, Y. Liu, Mark R. Gilbert, Natasha Kyprianou, Vivek M. Rangnekar, C. Horbinski, Y. Hu, Christoph Vo, Zhiyong Li, Ke Chen, Ning Ru, K. R. Hess, M. E. Linskey, Yi Zhou, Fangfang Hu, Katyayni Vinnakota, Susanne A. Wolf, Helmut Kettenmann, Philip J. Jackson, J. D. Larson, Dominic A. Beckmann, Branden S. Moriarity, David A. Largaespada, Shahrzad Jalali, S. Agnihotri, Samiksha Singh, K. Burrell, Sidney Croul, Gelareh Zadeh, S.-H. Kang, Mingru Yu, Ninghong Song, Kyungjoon Park, S.-G. Chi, Y.-G. Chung, S. K. Kim, J. W. Kim, Ji Young Kim, J. E. Kim, Sung‐Hyuk Choi, Tae‐Min Kim, S.-H. Lee, S.-K. Kim, Sun-Hyun Park, Il Hwan Kim, C.-K. Park, Hwapyung Jung, Michael A. Koldobskiy, Ishrat Ahmed, Gwo‐Tzer Ho, A M Snowman, Eric H. Raabe, C. Eberhart, Stacey Snyder, Isabel Gugel, Anne Bornemann, G. Pantazis, Stephen C. Mack, David Shih, N. Sabha, Marcos Tatagiba, Boris Krischek, A. Schulte, Katrin Liffers, A. Kathagen, S. Riethdorf, Magdalena Westphal, K. Lamszus, J. S. Lee, Jian‐Hui Xiao, Parthiv Patel, J Schade, J. Wang, Benjamin Deneen, H.-R. Song, Lina Leiss, Cecilie Gjerde, Halala Sdik Saed, Anisur Rahman, Seyed Mohammad Lellahi, Per Øyvind Enger, R. Leung, Octávia Monteiro Gil, L. Lei, P. Canoll, Stella Sun, Doheon Lee, A. S. W. Ho, J. K. S. Pu, X.-q. Zhang, N. P. Lee, P. J. R. Dat, Gkk Leung, D. Loetsch, Elisabeth Steiner, Karlheinz Holzmann, Christine Pirker, Juraj Hlavatý, Helga Petznek, Balázs Hegedűs, Tamás Garay, Thomas Mohr, Wolfgang Sommergruber, W. J. Lukiw, Benjamin Jones, Y. Zhao, Sagnika Bhattacharjee, F. Culicchia, N. Magnus, D. Garnier, B. Meehan, Sarah McGraw, Maryam Hashemi, T. H. Lee, Chlöe Milsom, Nashaat Z. Gerges, Jacquetta M. Trasler, Rafał Pawliński, Nigel Mackman, J. Rak, Zaynah Maherally, Andrew Thorne, Qi An, Eduard Barbu, Helen L. Fillmore, Gwendoline Pilkington, S. L. Tan, Siyuan Tan, Seong‐Ho Choi, Chad R. Potts, David A. Ford, Zaher Nahlé, A. M. Kenney, L. Matlaf, Shaukat Khan, Alain Zider, Ethan Singer, Charles Cobbs, L. Soroceanu, B. C. McFarland, S. W. Hong, Rajani Rajbhandari, G. B. Twitty, G. Kenneth Gray, Haiying Yu, S. E. Nozell, M. Minata, Sung‐Hoon Kim, Peizhong Mao, Jyoti Kaushal, I. Nakano, Takashi Mizowaki, T. Sasayama, K. Tanaka, Katsu Mizukawa, Masamitsu Nishihara, Satoshi Nakamizo, Hirokazu Tanaka, Masaaki Kohta, Koh Hosoda, E. Kohmura, S. Moeckel, K. Meyer, P. Leukel, U. Bogdahn, M. J. Riehmenschneider, Anja‐Katrin Bosserhoff, R. Spang, P. Hau, A. Mukasa, Aki Watanabe, Hideaki Ogiwara, H. Aburatani, J. Mukherjee, S. Obha, W. See, R. Pieper, Ryo Otsuka, David Kung, Tridib Kumar Sinha, Gordon P. Meares, Susan E. Nozell, Martina Ott, Ulrike Litzenburger, Katharina J. Rauschenbach, Lukas Bunse, Stefan Pusch, Katharina Ochs, Felix Sahm, C. Opitz, Andreas von Deimling, W. Wick, Michael Platten, P. Peruzzi, Renee Read, Tim R. Fenton, J. Wykosky, S. Vandenberg, Ivan Babić, Akio Iwanami, Hao Yuan Yang, P. Mischel, Jaya Thomas, Michael Ronellenfitsch, Anna‐Luisa Thiepold, P. N. Harter, M. Mittelbronn, J. P. Steinbach, Yu. S. Rybakova, Anders Kalén, Ehab H. Sarsour, Prabhat C. Goswami, J. Silber, G. Harinath, Berta Lasheras Aldaz, Armida W. M. Fabius, Şevin Turcan, T. A. Chan, J. T. Huse, A. M. Sonabend, Manju Bansal, P. Guarnieri, C. Soderquist, J. Yun, Benjamin B. Kennedy, J. Sisti, S. Bruce, R. Bruce, Reshma Shakya, T. Ludwig, S. Rosenfeld, Peter A. Sims, J. N. Bruce, A Califano, M.-T. Stockhausen, Karina Kristoffersen, Louise Stobbe Olsen, H. S. Poulsen, B. Stringer, Bryan W. Day, G. H. Barry, Margaret Piper, P. Jamieson, K. Ensbey, Z. Bruce, Laura M. Richards, Andy Boyd, Alexandra Sufit, Tamara M. Burleson, Jingqing Le, Amy K. Keating, Terje Sundstrøm, Jobin K. Varughese, P. Harter, L. Prestegarden, K. Petersen, F. Azuaje, Clifford G. Tepper, Eileen Ingham, L. Even, Sheila Johnson, Kai Ove Skaftnesmo, M. Lund-Johansen, R. Bjerkvig, Katherine W. Ferrara, Frits Thorsen, Hideyuki TAKESHIMA, Shinsuke Yamashita, Kiyotaka Yokogami, Souhei Mizuguchi, H. Nakamura, J. Kuratsu, Toshiaki Fukushima, Koji Morishita, Ying Tang, D. Vaka, SF Chen, Anitha Ponnuswami, Y.-J. Cho, M. Monje, Tadashi Nakamura, D. Cahill, Katja Tiemann, Håkan Hedman, Simone P. Niclou, Marco Timmer, R. Tjiong, Gabriele Röhn, Roland Goldbrunner, Paul N. Stavrinou, Moritz Perrech, Mari Tokita, S. Mikheev, D. Sellers, Andrei M. Mikheev, Yuki Kosai, R. Rostomily, I. Tritschler, K. Seystahl, Joshua J. Schroeder, M. Weller, Anna Wade, A. E. Robinson, J. J. Phillips, Yuhua Gong, Ying Ma, R. Thompson, Q.-W. Fan, Christine Cheng, W. Clay Gustafson, Éric Charron, Peter Zipper, Rachel Wong, Jianjun Chen, Johnson Y.N. Lau, C. Knobbe-Thosen, Natalia Jura, G. Reifenberger, Kevan M. Shokat, William A. Weiss, Sihan Wu, Jianxin Hu, Thomas Weston Johns Taylor, Genaro R. Villa, Paul S. Mischel, Steven L. Gonias, D. Yamashita, Toru Kondo, Hiroyuki Takahashi, Akira Inoue, Shohei Kohno, Hironobu Harada, Shiro Ohue, T. Ohnishi, Pengfei Li, J. C. Ng, Larra W. Yuelling, Fang Du, Tanya Curran, Z.-j. Yang, Dan Zhu, Robert C. Castellino, Erwin G. Van Meir, Gulnaz Begum, Qinglu Wang, Shuo Yang, Shih‐Hua Lin, Kristopher T. Kahle

Bibliographic record

VenueNeuro-Oncology · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicATP Synthase and ATPases Research
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsCell biologyBiologySignal transductionCellComputational biologyGenetics

Abstract

fetched live from OpenAlex

Ikaros, a DNA-binding protein also known as Ikaros family zinc finger protein 1 (IKZF1), was initially shown to function critically in hematopoietic differentiation. Deletion or mutation of Ikaros has been associated with lymphoblastic, as well as acute and chronic myelogenous leukemias demonstrating that Ikaros can act as a tumor suppressor. Ikaros is predominantly expressed in a variety of tissue including the brain, suggesting that Ikaros may be involved in the physiological functions of glial growth. Other recent studies have shown that Ikaros can regulate the transition of neural progenitor cells to postmitotic neurons which eventually differentiate into glial cells. Deregulation of glial development and/or growth has been shown to initiate glioblastoma (GBM) growth suggesting that Ikaros may be involved in GBM tumorigenesis. The goal of this study was to determine if Ikaros plays an important role in glial tumorigenesis. Analysis using the TCGA and Rembrandt databases demonstrated that decreased expression of Ikaros leads to worse prognosis in GBM patients (P , 0.01). In addition, the Ikaros promoter was found to be hypermethylated (85% of samples) in GBM samples suggesting that inhibition of Ikaros may contribute to glial tumorigenesis. To determine if Ikaros is involved in glial tumorigenesis we generated stable GBM cell lines that were transduced with HA-Ikaros. Enhanced expression of Ikaros resulted in a 3-to 4-fold reduction in proliferation and a 2-to 3-fold reduction in colony formation. In addition, exogenous expression of Ikaros inhibited the migration of GBM cells suggesting that Ikaros may also be involved in the invasiveness of glial cancers. Together our data suggests that Ikaros may play an important role in suppressing glial tumor formation and may be a novel biomarker for GBMs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.330
Threshold uncertainty score0.450

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.312
Teacher spread0.295 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2013
Admission routes1
Has abstractyes

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