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A high‐resolution chemical and structural study of framboidal pyrite formed within a low‐temperature bacterial biofilm

2008· article· en· W2167083043 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueGeobiology · 2008
Typearticle
Languageen
FieldEngineering
TopicMetal Extraction and Bioleaching
Canadian institutionsHudbay Minerals (Canada)Western University
FundersBasic Energy SciencesU.S. Department of EnergyNational Institutes of HealthNational Science Foundation
KeywordsPyriteDiagenesisMineralogyExtracellular polymeric substanceMicrobial matSulfide mineralsPyrrhotiteBiofilmMineralGeologyChemistryMaterials scienceMetallurgyBacteria

Abstract

fetched live from OpenAlex

A novel, anaerobically grown microbial biofilm, scraped from the inner surface of a borehole, 1474 m below land surface within a South African, Witwatersrand gold mine, contains framboidal pyrite. Water flowing from the borehole had a temperature of 30.9 degrees C, a pH of 7.4, and an Eh of -50 mV. Examination of the biofilm using X-ray diffraction, field emission gun scanning electron microscope equipped for energy dispersive X-ray microanalysis demonstrated that the framboids formed within a matrix of bacteria and biopolymers. Focused ion beam sectioning of framboids followed by NEXAFS measurements using both scanning transmission X-ray microscopy and X-ray photoelectron emission microscopy revealed that the pyrite crystals grew within an organic carbon matrix consisting of exopolysaccharides and possibly extracellular DNA, which is intuitively important in sulfide mineral diagenesis. Growth of individual pyrite crystals within the framboid occurred inside organic templates confirms the association between framboidal pyrite and organic materials in low-temperature diagenetic environments and the important role of microenvironments in biofilms in regulating geochemical cycles.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.458
Threshold uncertainty score0.417

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.209
Teacher spread0.200 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it