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Record W2169309000 · doi:10.1373/clinchem.2011.180778

Design of Tumor Biomarker–Monitoring Trials: A Proposal by the European Group on Tumor Markers

2012· article· en· W2169309000 on OpenAlexaff
György Sölétormos, Michael J. Duffy, Daniel F. Hayes, Catharine M. Sturgeon, Vivian Barak, Patrick M. Bossuyt, Eleftherios P. Diamandis, Massimo Gion, Per Hyltoft-Petersen, R. Lamerz, Dorte Nielsen, Paul Sibley, Bengt Tholander, Malgorzata Tuxen, Johannes M.G. Bonfrèr

Bibliographic record

VenueClinical Chemistry · 2012
Typearticle
Languageen
FieldMedicine
TopicRadiomics and Machine Learning in Medical Imaging
Canadian institutionsUniversity of TorontoMount Sinai Hospital
Fundersnot available
KeywordsBiomarkerMedicineRandomized controlled trialOncologyClinical trialCancerInternal medicineIntensive care medicineBiology

Abstract

fetched live from OpenAlex

A major application of tumor biomarkers is in serial monitoring of cancer patients, but there are no published guidelines on how to evaluate biomarkers for this purpose. The European Group on Tumor Markers has convened a multidisciplinary panel of scientists to develop guidance on the design of such monitoring trials. The panel proposes a 4-phase model for biomarker-monitoring trials analogous to that in use for the investigation of new drugs. In phase I, biomarker kinetics and correlation with tumor burden are assessed. Phase II evaluates the ability of the biomarker to identify, exclude, and/or predict a change in disease status. In phase III, the effectiveness of tumor biomarker-guided intervention is assessed by measuring patient outcome in randomized trials. Phase IV consists of an audit of the long-term effects after biomarker monitoring has been included into standard patient care. Systematic well-designed evaluations of biomarkers for monitoring may provide a stronger evidence base that might enable their earlier use in evaluating responses to cancer therapy.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.405
metaresearch head score (Gemma)0.271
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.405
Threshold uncertainty score0.734

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.4050.271
Meta-epidemiology (narrow)0.0040.003
Meta-epidemiology (broad)0.0070.014
Bibliometrics0.0040.004
Science and technology studies0.0020.009
Scholarly communication0.0100.011
Open science0.0070.008
Research integrity0.0490.026
Insufficient payload (model declined to judge)0.0040.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.087
GPT teacher head0.395
Teacher spread0.308 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations39
Published2012
Admission routes1
Has abstractyes

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