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Record W2173012814 · doi:10.1139/cjfas-2012-0402

Improving the accuracy of aquatic macroinvertebrate trait assignment — the importance of taxon-weighting

2013· article· en· W2173012814 on OpenAlexvenueno aff
Kieran A. Monaghan, Amadeu M.V.M. Soares

Bibliographic record

VenueCanadian Journal of Fisheries and Aquatic Sciences · 2013
Typearticle
Languageen
FieldEnvironmental Science
TopicFreshwater macroinvertebrate diversity and ecology
Canadian institutionsnot available
FundersCentre for Ecology and HydrologyNatural Environment Research CouncilFundação para a Ciência e a TecnologiaLlywodraeth CymruScottish Environment Protection Agency
KeywordsTraitTaxonWeightingStatisticsNull modelEcologyA priori and a posterioriBiologyMathematicsComputer science

Abstract

fetched live from OpenAlex

Weighting family-level trait descriptions by taxon frequencies improved the accuracy of macroinvertebrate traits defined at both the individual and community level compared with trait descriptions derived from the proportionate inclusion of all taxa. Applying a priori data on (i) national rarity (rarity model) and (ii) frequency occurrence at reference sites (quality model), the deviation of family trait descriptions was measured in relation to a nonweighted null model. Overall, the quality model was more divergent than the rarity model, reflecting the respective specific and general survey protocols associated with their source data. Assessing performance with contrasting datasets demonstrated that taxon-weighting provided improved accuracy even when survey protocols associated with model data and test sites were discordant. However, accuracy generally increased as the geographic coverage and sampling methods of weighted models and test data corresponded more closely. Measuring trait variability within families provides a useful indicator of the expected accuracy of generalized trait descriptions, while distinguishing variability in terms of even or skewed dispersion suggests options for the further refinement of assessment protocols.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.045
metaresearch head score (Gemma)0.097
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.045
Threshold uncertainty score0.240

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0450.097
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0030.002
Science and technology studies0.0010.001
Scholarly communication0.0030.004
Open science0.0020.003
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.186
Teacher spread0.170 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2013
Admission routes1
Has abstractyes

Explore more

Same venueCanadian Journal of Fisheries and Aquatic SciencesSame topicFreshwater macroinvertebrate diversity and ecologyFrench-language works237,207