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Record W2181951355

DNA barcoding of select freshwater and marine red algae (Rhodophyta)

2010· article· en· W2181951355 on OpenAlexaboutno aff
Jan Rueness

Bibliographic record

VenueCryptogamie Algologie · 2010
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicMarine and coastal plant biology
Canadian institutionsnot available
Fundersnot available
KeywordsBiologyDNA barcodingIntraspecific competitionAlgaeRed algaeBotanySpecies complexZoologyTaxonomy (biology)Phylogenetic treeGeneticsGene
DOInot available

Abstract

fetched live from OpenAlex

T he first COI sequences from European material of Batrachospermum helminthosum and B. gelatinosum are presented and compared with equivalent data from North America. The variation between the continents was 53 bp (8%) and 10 bp (1.5%), respectively for the two species, suggesting cryptic diversity in at least the former species. Polysiphonia hemisphaerica from Norway and P. boldii from Texas differed by 8b p( 1.2%). Ah ybrid tetrasporophyte produced from ac ross between these two species revealed COI sequence identical with that of the female parent, demonstrating uniparental inheritance of mitochondria. Ptilota serrata and P. gunneri ,w hich can be difficult to distinguish morpholo- gically, were 38 bp (5.7%) different with no intraspecific variation. Sequences for as pecies temporarily labeled as P. serrata sp.1 from eastern Canada in The Barcode of Life Data Systems (BOLD), were identical with that for P. gunneri from Norway. The morphologi- cally similar species Plumaria plumosa is represented by triploid parasporangial plants and sexually reproducing plants that are geographically separated, with only the asexual phase at the northern part of the range. The two phases had COI sequences that differed by 4b p. Sequences of the invasive species Gracilaria vermiculophylla from France and the Russian Far East (Vladivostok) were identical and similar to the reported invasive haplotype from elsewhere. In addition, COI sequences obtained for Heterosiphonia japonica and Anti- thamnion hubbsii from introduced populations in Norway are presented. COI /D NA barcoding /r ed algae /s pecies identification /R hodophyta / Batrachospermum / Ptilota / Plumaria / Polysiphonia hemisphaerica / Polysiphonia boldii / Gracilaria vermiculophylla / Heterosiphonia japonica / Antithamnion hubbsii

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0030.002
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0060.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.214
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations19
Published2010
Admission routes1
Has abstractyes

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