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Record W2182321036 · doi:10.26443/msurj.v4i1.74

How taxonomic revisions affect the interpretation of specimen identification in biological field data

2009· article· en· W2182321036 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueMcGill Science Undergraduate Research Journal · 2009
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicCollembola Taxonomy and Ecology Studies
Canadian institutionsnot available
FundersU.S. Geological SurveyMcGill University
KeywordsTaxonEcologyBiologyIdentification (biology)Taxonomy (biology)NomenclatureTaxonomic rankDocumentationSpecies identificationGeographyZoology

Abstract

fetched live from OpenAlex


 
 
 
 Cumulative revisions in taxonomy of organisms over time can create difficulties for researchers in numerous scientific fields, including conservation biology. This paper compares the taxonomic names of the Collembola species named in Ivan P. Vtorov’s 1993 paper entitled Feral Pig Removal: Effects on Soil Microarthropods in a Hawaiian Rain Forest, with the more modern Collembola checklists. In comparing Vtorov’s original graphs with recreated graphs, this study finds that out of the sixteen species Vtorov collected, three had changed generic names, two had changed species names, and one was absent from modern Collembola checklists. Five taxa were identified only up to genus, making it impossible to evaluate them in comparison with modern checklists. Only six species matched current moneclature of soil microarthropods. Not only were there taxonomic reclassifications, but also differences in the descriptions of species’ ecological status indicating whether the species was endemic or adventive. None of the three species described as endemic in Vtorov’s study were listed as such in current checklists. Additionally, Vtorov did not deposit voucher specimens, so morphological comparisons or re-identification of species named in his study are impossible. Inconsistencies due to changes in nomenclature and the species’ ecological status or lack of physical documentation can, as shown here, be detrimental to researchers examining data from older studies.
 
 
 

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.007
metaresearch head score (Gemma)0.003
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesScience and technology studies
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.878
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0070.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0020.001
Scholarly communication0.0000.001
Open science0.0020.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.183
GPT teacher head0.371
Teacher spread0.189 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it