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Record W2184751283 · doi:10.11646/zootaxa.3586.1.9

Phylogenetic Relationships of the Genus Homatula (Cypriniformes: Nemacheilidae), with Special Reference to the Biogeographic History around the Yunnan-Guizhou Plateau

2012· article· en· W2184751283 on OpenAlexaff
Rui Min, Xiao‐Yong Chen, Junxing Yang, Richard Winterbottom, Richard L. Mayden

Bibliographic record

VenueZootaxa · 2012
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicFish Biology and Ecology Studies
Canadian institutionsRoyal Ontario Museum
FundersNational Natural Science Foundation of ChinaChinese Academy of SciencesNational Science Foundation
KeywordsCypriniformesBiologyPlateau (mathematics)GenusPhylogenetic treeCladeCytochrome bFaunaZoologyEvolutionary biologyEcologyMitochondrial DNAGeneGenetics

Abstract

fetched live from OpenAlex

Species of the nemacheilid genus Homatula are endemic to the Yunnan-Guizhou Plateau of China. Herein we provide phy-logenetic inferences of species relationships based on complete sequences of the mitochondrial cytochrome b gene (cyt b)and partial sequences of the nuclear recombination activation gene (RAG 1). Both gene trees (and the concatenated dataset) support the recognition of five clades in the genus. These analyses also support the hypothesis that two of the lineagesresolved represent undescribed species awaiting formal description, and, further, that two previously recognized speciesare junior synonyms; both are genetically indistinguishable from other previously recognized species. Divergence timesof the major clades in Homatula are inferred to be Late Pliocene and the Early Pleistocene, and are correlated with themassive geological events associated with the uplift of the Qinghai-Tibetan Plateau occurring at these times. The recon-struction of drainage histories suggests that the fish faunas of the Nu and Lancang rivers are basal relative to other riverinefaunas in the region, and that the Nanpan and the Jinsha rivers share a more recent history than with any other river systems included in our study.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.313
Threshold uncertainty score0.618

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.209
Teacher spread0.164 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations18
Published2012
Admission routes1
Has abstractyes

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