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Record W2225825761 · doi:10.1371/journal.pbio.1002331

Where Have All the Rodents Gone? The Effects of Attrition in Experimental Research on Cancer and Stroke

2016· review· en· W2225825761 on OpenAlexaff
Constance Holman, Sophie K. Piper, Ulrike Grittner, Andreas Antonios Diamantaras, Jonathan Kimmelman, Bob Siegerink, Ulrich Dirnagl

Bibliographic record

VenuePLoS Biology · 2016
Typereview
Languageen
FieldVeterinary
TopicAnimal testing and alternatives
Canadian institutionsMcGill University
FundersBundesministerium für Bildung und Forschung
KeywordsAttritionStatistical powerBiologySample size determinationStatisticsOutlierStroke (engine)Random effects modelCancerMeta-analysisMathematicsMedicineInternal medicineGenetics

Abstract

fetched live from OpenAlex

Given small sample sizes, loss of animals in preclinical experiments can dramatically alter results.However, effects of attrition on distortion of results are unknown.We used a simulation study to analyze the effects of random and biased attrition.As expected, random loss of samples decreased statistical power, but biased removal, including that of outliers, dramatically increased probability of false positive results.Next, we performed a meta-analysis of animal reporting and attrition in stroke and cancer.Most papers did not adequately report attrition, and extrapolating from the results of the simulation data, we suggest that their effect sizes were likely overestimated.Where have all the rodents gone?Ooh ooh, ooh ooh, ooh To non-random attrition, every one When will they ever learn?-with apologies to Pete Seeger, 1955

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.023
metaresearch head score (Gemma)0.049
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.977
Threshold uncertainty score0.124

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0230.049
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0040.004
Bibliometrics0.0020.002
Science and technology studies0.0000.002
Scholarly communication0.0020.003
Open science0.0020.001
Research integrity0.0030.002
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.503
GPT teacher head0.553
Teacher spread0.050 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designObservational
DomainMethods
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations118
Published2016
Admission routes1
Has abstractyes

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