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Record W2248123853

Abstract 16926: First Global Assessment of Circulating Plasma MicroRNAs as Potential Biomarkers for Pulmonary Arterial Hypertension

2012· article· en· W2248123853 on OpenAlexaff
Kenny Schlosser, R. James White, Duncan J. Stewart

Bibliographic record

VenueCirculation · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicroRNA in disease regulation
Canadian institutionsUniversity of Ottawa
Fundersnot available
KeywordsMedicineCohortmicroRNADiseaseInternal medicineOncologyBiomarkerMiR-122Cohort studyBioinformaticsGeneBiologyGenetics
DOInot available

Abstract

fetched live from OpenAlex

Background: Circulating extracellular microRNAs (miRNAs) have been identified as possible biomarkers in cancer and some cardiovascular diseases, but as yet their levels have not been examined in the plasma of patients with pulmonary arterial hypertension (PAH). Hypothesis: Altered levels of circulating miRNAs will provide insight into underlying mechanisms of PAH and serve as disease-specific biomarkers. Methods: A global screen of 1066 different miRNAs was performed with a discovery cohort of 4 treatment-naive patients with idiopathic (I) PAH and 3 healthy controls (age and sex matched). Total RNA was extracted from plasma and profiled with a miRNA (RT)-qPCR array platform (Qiagen). A separate cohort of 13 healthy controls and 14 PAH patients (8 associated (A) and 6 IPAH) was used for validation purposes. MicroRNA expression levels were normalized with a mean-centering restricted method in the discovery cohort, and 2 novel internal reference genes were used in the validation cohort. Results: 436±45 miRNAs were detectable (PCR Cq cutoff Conclusion: This first global assessment of circulating miRNAs in IPAH supports their utility as non-invasive biomarkers for disease activity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.268
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes1
Has abstractyes

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