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FRET assessment of CFTR molecular assembly

2008· article· en· W2256846930 on OpenAlexaff
Bakhrom K. Berdiev, Albert Tousson, Henderika M.J. Oosterveld‐Hut, Yawar J. Qadri, Estelle Cormet‐Boyaka, Jeong S. Hong, Cathy M. Fuller, Eric J. Sorscher, Gergely L. Lukács, Dale Benos

Bibliographic record

VenueThe FASEB Journal · 2008
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProtein Structure and Dynamics
Canadian institutionsHospital for Sick Children
FundersNational Institutes of Health
KeywordsFörster resonance energy transferChemistryYellow fluorescent proteinBiophysicsFluorescence recovery after photobleachingFluorescenceCytoplasmMolecular biologyBiochemistryBiologyGeneMembranePhysics

Abstract

fetched live from OpenAlex

In spite of extensive studies, uncertainty exists regarding the number of CFTR molecules that come together to form a conducting pore. At present, findings point both to monomeric and multimeric assembly of CFTR protein. We evaluated the CFTR assembly by fluorescence resonance energy transfer imaging. FRET exploits the exquisite sensitivity of fluorescence measurements to detect molecular complexes with near angstrom resolution. We assayed for FRET between (i) N‐terminally tagged CFTRs (ECFP‐CFTR and EYFP‐CFTR); (ii) C‐terminally tagged CFTRs (CFTR‐ECFP and CFTR‐EYFP); and (iii) both N‐terminally and C‐terminally tagged CFTRs (ECFP‐CFTR and CFTR‐EYFP). We found no appreciable increase in CFP fluorescence after selective photobleaching of YFP, indicative of no FRET occurrence. Our findings show that the cytoplasmic tails of CFTR are not in sufficient proximity for the occurrence of FRET, suggestive of monomeric organization of CFTR. Supported by NIH 2RO1‐DK37206‐15, NIH P50 DK53090‐05, NIH RO1‐ DK075302 , CFF/CFFT.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.000
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.258
Teacher spread0.250 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2008
Admission routes1
Has abstractyes

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