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Identification and Functional Characterization of Phosphorylation Sites on GTP cyclohydrolase I

2009· article· en· W2258171847 on OpenAlexaff
Jianhai Du, Na Wei, Hao Xu, Jeannette Vásquez‐Vivar, Kirkwood A. Pritchard, Yang Shi

Bibliographic record

VenueThe FASEB Journal · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolism and Genetic Disorders
Canadian institutionsPediatric Oncology Group
Fundersnot available
KeywordsTetrahydrobiopterinGTP cyclohydrolase IMutantPhosphorylationBiochemistryMolecular biologySerineAlanineChemistryThreonineEnzymeAspartic acidBiologyAmino acidCofactor

Abstract

fetched live from OpenAlex

GTP cyclohydrolase I (GCH‐1) is the rate‐limiting enzyme for the biosynthesis of tetrahydrobiopterin (BH4), an essential cofactor for nitric oxide synthases (NOS) and aromatic amino acid hydrolases. In this study, we aim to identify specific phosphorylation sites on GCH‐1 and characterize their function. Rat GCH‐1 with FLAG tag was subcloned into a Tet‐On plasmid which was stably expressed in Flp‐in 293 cells. Mass spectrometry studies revealed GCH‐1 was phosphorylated in vivo at serine(S) 167 and threonine (T) 231. Sequence analysis of GCH‐1 protein showed 8 potential phosphorylation sites [S51, S72, T85, T91, T103, S130, S167 and T231]. Functional studies demonstrated that GCH‐1 activity and BH4 levels were significantly decreased in cells expressing phospho‐defective alanine (A) mutants S72 A, T85A, T91A, T103A or S130A while they were increased in cells expressing the T231A mutant. Furthermore, GCH1 activity, and BH4 levels were increased in cells expressing the phospho‐mimic glutamic acid (E)/aspartic acid (D) mutants S72E, T85E, T91E, T103D or T130D, while they were decreased in cells expressing the T231D mutant. Interestingly, cells expressing the S51E, but not S51A had increased cellular BH4 production, while cells expressing S167A or S167E mutant did not affect BH4 synthesis. In summary, our study suggests that GCH‐1 is positively and negatively regulated by multiple phosphorylation sites.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.217
Teacher spread0.209 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2009
Admission routes1
Has abstractyes

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