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Record W2260562977 · doi:10.2135/cropsci2015.06.0336

Analysis and Handling of G × E in a Practical Breeding Program

2015· article· en· W2260562977 on OpenAlexaff
Weikai Yan

Bibliographic record

VenueCrop Science · 2015
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicGenetics and Plant Breeding
Canadian institutionsAgriculture and Agri-Food Canada
Fundersnot available
KeywordsBiplotBiologyAvenaGenotypeStability (learning theory)Gene–environment interactionCropBiological systemBiotechnologyStatisticsAgronomyMathematicsComputer scienceGeneticsMachine learning

Abstract

fetched live from OpenAlex

Genotype by environment interaction (GE) is a reality in plant breeding and crop production, and has to be dealt with. There are but two viable options to deal with GE: to utilize it or to avoid it, depending on whether it is repeatable. Repeatable GE can be selected for (utilized) whereas unrepeatable GE has to be selected against (avoided). To utilize GE involves identifying repeatable GE, dividing the target region into subregions or megaenvironments (ME) based on the repeatable GE pattern, and selecting within ME. By definition, GE within ME is unrepeatable and has to be avoided. To avoid unrepeatable GE is to test in a sufficient number of environments (locations and years) representing the target ME and to select both high mean performance and high stability. My preferred analytic tool for identifying repeatable GE, ME analysis, representative test locations, and superior genotypes is GGE (genotypic main effect plus GE) biplots, which was demonstrated using oat ( Avena sativa L.) yield data from multilocation multiyear trials. Some important issues on GE study, in relation to genotype evaluation, were discussed. These included the framework of multiyear multilocation trials, the distinction between repeatable and nonrepeatable components of GE, the need to consider both genotypic main effect (G) and GE, and the relative importance of mean performance (G) vs. stability (GE) in genotype evaluation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.011
metaresearch head score (Gemma)0.031
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.011
Threshold uncertainty score0.058

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0110.031
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.003
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0060.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.096
GPT teacher head0.307
Teacher spread0.211 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations98
Published2015
Admission routes1
Has abstractyes

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