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Record W2263381938 · doi:10.1021/acs.biochem.5b01140

Biochemical Comparison of Tpm1.1 (α) and Tpm2.2 (β) Tropomyosins from Rabbit Skeletal Muscle

2016· article· en· W2263381938 on OpenAlexaff
Elke M. Lohmeier‐Vogel, David H. Heeley

Bibliographic record

VenueBiochemistry · 2016
Typearticle
Languageen
FieldMedicine
TopicCardiomyopathy and Myosin Studies
Canadian institutionsMemorial University of NewfoundlandUniversity of Calgary
Fundersnot available
KeywordsTropomyosinActinSkeletal muscleMyosinChemistryBiochemistryBiophysicsSalt bridgeBiologyAnatomy

Abstract

fetched live from OpenAlex

Tpm1.1 (α) and Tpm2.2 (β) tropomyosins (39 amino acid substitutions) were isolated from adult rabbit skeletal muscle without chemical modification of cysteine, with negligible phosphorylation as assessed by two-dimensional polyacrylamide gel electrophoresis, and characterized biochemically. Reconstituted skeletal thin filaments composed of Tpm2.2 produce ∼30% less Ca(II)-induced activation of the steady-state actomyosin-S1MgATPase rate than Tpm1.1 does. This is observed at a high S1/actin ratio (6 μM myosin-S1A1, 3 μM thin filaments, pCa 4) and as a function of pCa (0.3 μM myosin-S1A1, 25 μM thin filaments). The two pCa versus MgATPase relationships are similar in terms of their steepness and midpoint. Isotype has a bearing on self-polymerization and interaction with troponin. Solutions (pH 7, ionic strength of ∼30 mM) of Tpm2.2 are more viscous than solutions of Tpm1.1, an observation explained by substitutions at the carboxy-terminal end of the molecule, including His276Asn and Met281Ile. Conversely, the enhancement of viscosity of Tpm1.1 by skeletal troponin is greater than that for Tpm2.2. Further, Tpm1.1 binds more strongly than Tpm2.2 to skeletal troponin-Sepharose, as evidenced by a later elution position in the salt gradient. Mixtures of tropomyosin and the amino-terminal CNBr fragment of troponin-T, CB1 (residues 1-151), were chromatographed on a size exclusion column in the presence of different concentrations of KCl. In 0.1 M salt, CB1 co-elutes with either isoform but is largely dissociated at 0.22 M. At intermediate salt concentrations, different degrees of complexation are observed, more extensive for Tpm1.1 than for Tpm2.2. Thus, the first reported variants of tropomyosin are distinct in their interactive and functional properties. The biochemical properties of Tpm2.2 are of particular relevance to the immature skeletal muscle thin filament.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.276
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2016
Admission routes1
Has abstractyes

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