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MAPPING THE LIGAND INTERACTION OF THE AT1 –RECEPTOR WITH PHOTOPROBES IN ALL POSITIONS OF ANGIOTENSIN II

2008· article· en· W2269706043 on OpenAlexaff
Dany Fillion, Marie-Ève Beaulieu, Pierre Lavigne, Gaétan Guillemette, Richard Leduc, Emanuel Escher

Bibliographic record

VenueThe FASEB Journal · 2008
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicReceptor Mechanisms and Signaling
Canadian institutionsUniversité de Sherbrooke
Fundersnot available
KeywordsPhotoaffinity labelingReceptorChemistryAngiotensin IIStereochemistryLigand (biochemistry)Angiotensin II receptor type 1Biochemistry

Abstract

fetched live from OpenAlex

We have combined a photoaffinity labelling approach to study the molecular structure of the liganded human angiotensin II (AngII) type 1 receptor (hAT1). Systematic incorporation of the photoprobes p‐benzoyl‐L‐phenylalanine (Bpa) or p–[3–(trifluoromethyl)–3H–diazirin–3–yl]–L–phenylalanine (Tdf) into each of the eight positions of the AngII sequence was carried out. Since the constitutively active mutant [N111G]‐hAT1 (hAT1‐CAM) had a more permissive structure‐activity relationship, photoaffinity labelling studies were carried out on this CAM‐receptor. The AngII‐photoprobe analogues substituted in position 1, 2, 3 and 5 displayed AngII‐like properties on hAT1‐CAM. Analogues substituted in position 7 and 8 were shown to be low nM affinity neutral antagonists whereas analogues substituted in positions 4 and 6 had too low affinities. Receptor labelling experiments evidence localisation of the peptide N‐terminus in the extracellular space of the receptor through contact with most extracellular elements of hAT1 A single contact with ECL2 was found at position 3 of AngII. The middle sequence elements are still ill‐defined but the AngII C‐terminal is in close contact with the trans‐membrane bundle formed by TMD3, 5, 6 and 7, in accord with previous results (Clement, JBC. 2005; 280:27121). This study again confirms the extended ligand structure in the hAT1 receptor.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.229
Teacher spread0.207 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2008
Admission routes1
Has abstractyes

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