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Transmembrane domain 1 of human dopamine D1 and D5 receptors is a crucial structural determinant for ligand affinity and selectivity

2008· article· en· W2273105472 on OpenAlexafffund
Jean‐Philippe D'Aoust, Mario Tiberi

Bibliographic record

VenueThe FASEB Journal · 2008
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicReceptor Mechanisms and Signaling
Canadian institutionsUniversity of Ottawa
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsReceptorDopamine receptorTransmembrane domainLigand (biochemistry)ChemistryBiologyBiochemistry

Abstract

fetched live from OpenAlex

Human D1‐like dopaminergic G protein‐coupled receptors (D1R and D5R) exhibit marked differences in their ligand binding properties while sharing an overall 80% degree of identity within transmembrane (TM) regions. However, the TM1 regions of D1R and D5R display the most residue differences among all TM regions. Here, we explore the role of TM1 in regulating subtype‐specific ligand binding properties of D1R and D5R. TM1 region of D1R and D5R was swapped using polymerase chain reaction. Binding studies performed in transiently transfected cells show that the D5 chimera has a higher affinity for synthetic drugs as compared with wild type D5R whereas the D1 chimera displays a lower affinity for synthetic drugs in comparison with wild type D1R. Notably, the affinity of the natural ligand dopamine was not changed. Moreover, the selectivity ratio of chimeras for synthetic agonists was increased as compared to that of wild type receptors. Interestingly, the selectivity ratio measured for inverse agonists suggests that in striking contrast to wild type receptors, chimeras bind to inverse agonists with a similar affinity. Overall, our studies highlight a pivotal role of TM1 in shaping the binding pocket for synthetic drugs as well as in regulating differentially the selectivity of D1‐like receptors for synthetic drugs in an efficacy‐dependent manner. Supported by NSERC (#203694‐07; MT) and CIHR Graduate Scholarship (JPD).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.250
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2008
Admission routes2
Has abstractyes

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