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Record W2275531015 · doi:10.1016/j.yrtph.2016.02.018

Micro-CT imaging: Developing criteria for examining fetal skeletons in regulatory developmental toxicology studies – A workshop report

2016· article· en· W2275531015 on OpenAlexaff
Howard M. Solomon, Susan L. Makris, Hasan Alsaid, Oscar Bermudez, Bruce Beyer, Antong Chen, Connie L. Chen, Chen Zhou, Gary W. Chmielewski, Anthony M. DeLise, Luc De Schaepdrijver, Belma Dogdas, Julian M. French, Wafa Harrouk, Jonathan Helfgott, R. Mark Henkelman, Jacob Hesterman, Kok-Wah Hew, Alan M. Hoberman, Cecilia Lo, Andrew McDougal, Daniel R. Minck, Lelia Scott, Jane Stewart, Vicki Sutherland, Arun K. Tatiparthi, Christopher T. Winkelmann, L. David Wise, Sandra L. Wood, Xiaoyou Ying

Bibliographic record

VenueRegulatory Toxicology and Pharmacology · 2016
Typearticle
Languageen
FieldMedicine
TopicRadiation Dose and Imaging
Canadian institutionsSickKids FoundationHospital for Sick ChildrenUniversity of Toronto
FundersHealth and Environmental Sciences Institute
KeywordsDocumentationComputer scienceMedical physicsGood laboratory practiceData scienceRisk analysis (engineering)MedicinePathologyQuality assurance

Abstract

fetched live from OpenAlex

During the past two decades the use and refinements of imaging modalities have markedly increased making it possible to image embryos and fetuses used in pivotal nonclinical studies submitted to regulatory agencies. Implementing these technologies into the Good Laboratory Practice environment requires rigorous testing, validation, and documentation to ensure the reproducibility of data. A workshop on current practices and regulatory requirements was held with the goal of defining minimal criteria for the proper implementation of these technologies and subsequent submission to regulatory agencies. Micro-computed tomography (micro-CT) is especially well suited for high-throughput evaluations, and is gaining popularity to evaluate fetal skeletons to assess the potential developmental toxicity of test agents. This workshop was convened to help scientists in the developmental toxicology field understand and apply micro-CT technology to nonclinical toxicology studies and facilitate the regulatory acceptance of imaging data. Presentations and workshop discussions covered: (1) principles of micro-CT fetal imaging; (2) concordance of findings with conventional skeletal evaluations; and (3) regulatory requirements for validating the system. Establishing these requirements for micro-CT examination can provide a path forward for laboratories considering implementing this technology and provide regulatory agencies with a basis to consider the acceptability of data generated via this technology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.056
metaresearch head score (Gemma)0.024
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.944
Threshold uncertainty score0.295

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0560.024
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0040.001
Science and technology studies0.0020.003
Scholarly communication0.0050.005
Open science0.0040.007
Research integrity0.0060.005
Insufficient payload (model declined to judge)0.0040.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.069
GPT teacher head0.388
Teacher spread0.318 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
DomainMethods
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations14
Published2016
Admission routes1
Has abstractyes

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