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Record W2276077180 · doi:10.20381/ruor-4350

Identification and Expression Characterization of Surface Proteins for the Detection and Isolation of Listeria monocytogenes

2015· dissertation· en· W2276077180 on OpenAlexaboutno aff
Cathy Xin Yue Zhang

Bibliographic record

VenueuO Research (University of Ottawa) · 2015
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicListeria monocytogenes in Food Safety
Canadian institutionsnot available
Fundersnot available
KeywordsListeria monocytogenesIsolation (microbiology)Identification (biology)Characterization (materials science)MicrobiologyListeriaBiologyComputational biologyChemistryBacteriaMaterials scienceGeneticsNanotechnologyBotany

Abstract

fetched live from OpenAlex

Listeria monocytogenes causes a serious foodborne illness (listeriosis) with a fatality rate of about 30% in susceptible individuals (1). Timely identification of foods and food processing environments carrying this deadly bacterium is crucial for implementing effective interventions but remains a practical challenge due to the complexity of test samples, low level of bacterial contamination, and the ubiquity and the genetic diversity of Listeria isolates. The purpose of this work was to identify and assess surface proteins of L. monocytogenes that can serve as diagnostic biomarkers for pathogen isolation and detection using antibody-based methods. Bioinformatics analysis of 130 putative surface proteins encoded by the genome of L. monocytogenes F2365 (serotype 4b) revealed four uncharacterized proteins with extensive amino acid sequences unique to L. monocytogenes. These proteins did not contain identifiable PrfA-controlled promoter elements. The four proteins were expressed at the transcriptional level in vitro, as demonstrated by RT-PCR, but only one of the four proteins, LMOf2365_0639, was detected on the cell surface by immunofluorescence microscopy (IFM) using rabbit polyclonal antibodies (PAbs) raised against corresponding recombinant proteins. Transcription start site mapping and promoter prediction analysis provided evidence that the LMOf2365_0639 gene was expressed under the control of a sigma B factor-dependent promoter, an alternative sigma factor involved in stress response. Non-gel based proteomics analysis of L. monocytogenes surface proteins identified 36 surface proteins in at least one of the three trials performed. IFM with PAbs raised against each of the five candidate surface proteins identified from the proteomics study revealed a strong fluorescence signal on the surface of live L. monocytogenes cells with LMOf2365_0148 specific PAbs, indicating a good level of expression of this protein. These results suggested the potential of the surface proteins LMOf2365_0639 and LMOf2365_0148 as diagnostic biomarkers for L. monocytogenes. Thirty-five and 24 monoclonal antibodies (MAbs) were developed against purified recombinant LMOf2365_0639 and LMOf2365_0148, respectively. Three MAbs against LMOf2365_0639 and five MAbs against LMOf2365_0148 were selected and evaluated for their potential in L. monocytogenes detection and isolation based on the observation that these MAbs recognized the highest number of the 53 L. monocytogenes isolates and the lowest number of the 10 other Listeria species isolates tested. None of these MAbs reacted with the four foodborne pathogens (Campylobacter jejuni, Samonella enterica serovar Typhimurium, Escherichia coli O157:H7 and Bacillus cereus) tested. All three MAbs to LMOf2365_0639 were specific for lineage I and II isolates of L. monocytogenes commonly found in clinical and food isolates respectively and recognized the N-terminal region of LMOf2365_0639. Anti-LMOf2365_0148 MAbs were reactive to lineage I and lineages III L. monocytogenes isolates commonly found in clinical and animal isolates respectively. Both LMOf2365_0639 and LMOf2365_0148 were expressed in standard enrichment culture conditions according to Health Canada’s MFHPB-30 and MFHPB-07 methods. In addition, MAbs against LMOf2365_0148 could specifically isolate live L. monocytogenes by immunomagnetic separation even in a mixture of L. monocytogenes and non-target L. innocua. The dissociation constants of the MAbs capable of capturing L. monocytogenes ranged from 2.58 x 10-8 M to 8.87 x 10-10 M. In conclusion, two novel surface proteins LMOf2365_0639 and LMOf2365_0148 were identified, were shown to be expressed in L. monocytogenes grown in standard selective enrichment cultures, and can be explored as surface biomarkers for the isolation and detection of L. monocytogenes with specific MAbs developed in this study.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.091
GPT teacher head0.353
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2015
Admission routes1
Has abstractyes

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